32 datasets found
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Federal
Drinking Water Microbiome Sequence Data Set
U.S. Environmental Protection Agency —
The fasta file (BM_OTU.fasta) contain the sequences of the bacterial 16S rRNA-encoding V4 region gene (≈250 nt) for each Operational Taxonomic Unit (OTU). This... -
Federal
Sablefish GI microbiome & histology - Incorporating Gastrointestinal Microbiome Analysis into Fish Nutritional Assessments
National Oceanic and Atmospheric Administration, Department of Commerce —
Sustainable culture of sablefish (Anoplopoma fimbria) is an active research area at NWFSC, with a primary objective of rearing a human food source under healthy,... -
Federal
Data From: Effects of species and sex on the gut microbiome of four laboratory-reared fruit fly lines (Diptera: Tephritidae) using full-length 16S rRNA PacBio Kinnex sequencing
Department of Agriculture —
Species- and sex-related differences of four laboratory tephritid fruit fly (Diptera: Tephritidae) gut microbiomes evaluated with full-length 16S rRNA PacBio Kinnex... -
Federal
Analytical Performance of Direct-to-Consumer Gut Microbiome Testing Services
Department of Commerce —
This repository contains raw and intermediate data files as well as analysis code from the manuscript "Evaluating the Analytical Performance of Direct-to-Consumer Gut... -
Federal
Skin mycobiomes of eastern North American bats
Department of the Interior —
North American bats have experienced catastrophic population declines from white-nose syndrome (WNS), a fungal disease caused by Pseudogymnoascus destructans (Pd).... -
Federal
Analytical Performance of Direct-to-Consumer Gut Microbiome Testing Services
National Institute of Standards and Technology —
This repository contains raw and intermediate data files as well as analysis code from the manuscript "Evaluating the Analytical Performance of Direct-to-Consumer Gut... -
Federal
Data from: Assessment of bacterial diversity in the cattle tick Rhipicephalus (Boophilus) microplus through tag-encoded pyrosequencing
Department of Agriculture —
The objective of this study was to explore the R. microplus microbiome by applying the bacterial 16S tag-encoded FLX-titanium amplicon pyrosequencing (bTEFAP)... -
Federal
Measuring Microbial Community-Wide Antibiotic Resistance Propagation via Natural Transformation in the Human Gut Microbiome
Department of Commerce —
This repository includes the raw data, analysis code, and results of a systematic analysis of natural transformation (i.e., horizontal gene transfer; HGT) of bacteria... -
Federal
A Sensitivity Analysis of Methodological Variables Associated with Microbiome Measurements
National Institute of Standards and Technology —
This repository provides the raw data, analysis code, and results generated during a systematic evaluation of the impact of selected experimental protocol choices on... -
Federal
A Sensitivity Analysis of Methodological Variables Associated with Microbiome Measurements
Department of Commerce —
This repository provides the raw data, analysis code, and results generated during a systematic evaluation of the impact of selected experimental protocol choices on... -
Federal
Drinking Water Microbiome OTU Abundance Data Set
U.S. Environmental Protection Agency —
An abundance matrix (BM_OTU.xlsx) contains rows as OTU, columns as samples, and entries representing the abundance of each OTU as a ratio of all sequences obtained... -
Federal
Measuring Microbial Community-Wide Antibiotic Resistance Propagation via Natural Transformation in the Human Gut Microbiome
National Institute of Standards and Technology —
This repository includes the raw data, analysis code, and results of a systematic analysis of natural transformation (i.e., horizontal gene transfer; HGT) of bacteria... -
Federal
Data from: Evaluating impacts of radiation-induced sterilization on the performance and gut microbiome of mass-reared Mediterranean fruit fly (Ceratitis capitata) in Hawai’i
Department of Agriculture —
Mediterranean fruit fly males reared for sterile insect technique (SIT) have been shown to have differences in their microbiomes relative to other population sources,... -
Federal
Microbial Community Analysis based on 16S rRNA gene of Sediment Layers
U.S. Environmental Protection Agency —
A table (DP_OTU.xlsx) contains rows as OTUs, columns as samples, and entries representing the abundance of each OTU. This dataset is associated with the following... -
Federal
Microbiota alter metabolism and mediate neurodevelopmental toxicity of 17beta-estradiol
U.S. Environmental Protection Agency —
Effects of developmental 17beta-estradiol exposure on microbiota and behavior in zebrafish. This dataset is associated with the following publication: Catron, T., A.... -
Federal
Data for Weitekamp et al. "Triclosan-resistant host-associated microbiota perform xenobiotic biotransformations in larval zebrafish"
U.S. Environmental Protection Agency —
This file contains data used to generate figures shown in Weitekamp et al. Triclosan-resistant host-associated microbiota perform xenobiotic biotransformations in... -
Federal
16S rRNA whole-organism microbiome sequencing for larval insects, adult insects, and riparian spiders collected from Torch Lake and Gratiot Lake, Keweenaw Peninsula, Michigan, USA, July and October 2021
Department of the Interior —
This data release includes sampling location data, the information about sequenced organisms and the SRA accession number for the 16S whole-organism sequencing data... -
Federal
Skin mycobiomes of western North American bats
Department of the Interior —
White-nose syndrome (WNS), a fungal disease that has caused catastrophic population declines of bats in eastern North America, is rapidly spreading across the... -
Federal
Data from: Pyrosequencing-Based Analysis of the Microbiome Associated with the Horn Fly, Haematobia irritans
Department of Agriculture —
The bacterial 16S tag-encoded FLX-titanium amplicon pyrosequencing (bTEFAP) method was used to carry out the classification analysis of bacterial flora in adult... -
Federal
Data from: Tephritid fruit fly gut bacterial population and community dynamics following adult emergence
Department of Agriculture —
Data include microbial count data (CFUs), 16S-rRNA copy number data (qPCR), and microbial community (microbiome) data from the guts of the invasive tephritid fruit...
32 datasets found