30 datasets found
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Federal
Drinking Water Microbiome OTU Abundance Data Set
U.S. Environmental Protection Agency —
An abundance matrix (BM_OTU.xlsx) contains rows as OTU, columns as samples, and entries representing the abundance of each OTU as a ratio of all sequences obtained... -
Federal
Analytical Performance of Direct-to-Consumer Gut Microbiome Testing Services
National Institute of Standards and Technology —
This repository contains raw and intermediate data files as well as analysis code from the manuscript "Evaluating the Analytical Performance of Direct-to-Consumer Gut... -
Federal
Sablefish GI microbiome & histology - Incorporating Gastrointestinal Microbiome Analysis into Fish Nutritional Assessments
National Oceanic and Atmospheric Administration, Department of Commerce —
Sustainable culture of sablefish (Anoplopoma fimbria) is an active research area at NWFSC, with a primary objective of rearing a human food source under healthy,... -
Federal
Monoassociation with bacterial isolates reveals the role of colonization, community complexity and abundance on locomotor behavior in larval zebrafish
U.S. Environmental Protection Agency —
Across taxa, animals with depleted intestinal microbiomes show disrupted behavioral phenotypes. Axenic (i.e., microbe-free) mice, zebrafish, and fruit flies exhibit... -
Federal
Data from: Full-length 16S rRNA sequencing on target microbe establishment in laboratory and mass-reared Mediterranean fruit fly
Department of Agriculture —
Study aim was to determine establishment success of antibiotic resistance bacteria in laboratory and mass-reared Mediterranean fruit fly (Ceratitis capitata).... -
Federal
Data from: Assessment of bacterial diversity in the cattle tick Rhipicephalus (Boophilus) microplus through tag-encoded pyrosequencing
Department of Agriculture —
The objective of this study was to explore the R. microplus microbiome by applying the bacterial 16S tag-encoded FLX-titanium amplicon pyrosequencing (bTEFAP)... -
Federal
Drinking Water Microbiome Sequence Data Set
U.S. Environmental Protection Agency —
The fasta file (BM_OTU.fasta) contain the sequences of the bacterial 16S rRNA-encoding V4 region gene (≈250 nt) for each Operational Taxonomic Unit (OTU). This... -
Federal
Skin mycobiomes of western North American bats
Department of the Interior —
White-nose syndrome (WNS), a fungal disease that has caused catastrophic population declines of bats in eastern North America, is rapidly spreading across the... -
Federal
A Sensitivity Analysis of Methodological Variables Associated with Microbiome Measurements
National Institute of Standards and Technology —
This repository provides the raw data, analysis code, and results generated during a systematic evaluation of the impact of selected experimental protocol choices on... -
Federal
Microbial Community Analysis based on 16S rRNA gene of Sediment Layers
U.S. Environmental Protection Agency —
A table (DP_OTU.xlsx) contains rows as OTUs, columns as samples, and entries representing the abundance of each OTU. This dataset is associated with the following... -
Federal
Functional Profile of Sediment Layers
U.S. Environmental Protection Agency —
A table (DP_KEGG.xlsx) contains rows as KEGG Orthology (KO), columns as sediment layers, and entries representing the abundance of each KO. This dataset is associated... -
Federal
Data for Weitekamp et al. "Triclosan-resistant host-associated microbiota perform xenobiotic biotransformations in larval zebrafish"
U.S. Environmental Protection Agency —
This file contains data used to generate figures shown in Weitekamp et al. Triclosan-resistant host-associated microbiota perform xenobiotic biotransformations in... -
Federal
Bioaccessibility of Arsenic from Contaminated Soils and Alteration of the Gut Microbiome in an In Vitro Gastrointestinal Model
U.S. Environmental Protection Agency —
Microbiome analyses. This dataset is associated with the following publication: Griggs, J., L. Chi, N. Hanley, M. Kohan, K. Herbin-Davis, D. Thomas, K. Lu, R. Fry,... -
Federal
Drinking Water Microbiome Taxonomic Lineage Abundance Data Set
U.S. Environmental Protection Agency —
An abundance matrix (BM_taxonomic_lineage.xlsx) contains rows as taxonomic lineage, columns as samples, and entries representing the abundance of each lineage as a... -
Federal
Enhancing Management Tools: Molecular Genetic Tracking to Target Microbial Pollution Sources in South Florida Coral Reefs, Year 1 - CRCP project #1114
National Oceanic and Atmospheric Administration, Department of Commerce —
Both coastal inlets and treated wastewater outfalls are recognized as major pathways for microbial contaminants from Land-Based Sources of Pollution (LBSP) to enter... -
Federal
Data from: Tephritid fruit fly gut bacterial population and community dynamics following adult emergence
Department of Agriculture —
Data include microbial count data (CFUs), 16S-rRNA copy number data (qPCR), and microbial community (microbiome) data from the guts of the invasive tephritid fruit... -
Federal
Data from: Impact of larval food source on the stability of the <i>Bactrocera dorsalis </i>microbiome
Department of Agriculture —
We conducted a fly rearing experiment to characterize diet-induced changes in the microbiome of female Bactrocera dorsalis. In order to explicitly investigate the... -
Federal
Sequencing Data Set of Sediment Layers
U.S. Environmental Protection Agency —
A table (DP_SRA.xlsx) contains rows as sample and columns as entries representing the biosample accession number (NCBI), collection (date), library strategy, target... -
Federal
Data From: Effects of species and sex on the gut microbiome of four laboratory-reared fruit fly lines (Diptera: Tephritidae) using full-length 16S rRNA PacBio Kinnex sequencing
Department of Agriculture —
Species- and sex-related differences of four laboratory tephritid fruit fly (Diptera: Tephritidae) gut microbiomes evaluated with full-length 16S rRNA PacBio Kinnex... -
Federal
CatronTara_A-brvd_MB2Dataset_20180221
U.S. Environmental Protection Agency —
This file contains data used to generate figures shown in Catron et al. Characterization of host toxicity and microbiota disruption in larval zebrafish following...
30 datasets found