44 datasets found
-
Federal
Analytical Performance of Direct-to-Consumer Gut Microbiome Testing Services
National Institute of Standards and Technology —
This repository contains raw and intermediate data files as well as analysis code from the manuscript "Evaluating the Analytical Performance of Direct-to-Consumer Gut... -
Federal
Microbiota alter metabolism and mediate neurodevelopmental toxicity of 17beta-estradiol
U.S. Environmental Protection Agency —
Effects of developmental 17beta-estradiol exposure on microbiota and behavior in zebrafish. This dataset is associated with the following publication: Catron, T., A.... -
Federal
Drinking Water Microbiome Sequence Data Set
U.S. Environmental Protection Agency —
The fasta file (BM_OTU.fasta) contain the sequences of the bacterial 16S rRNA-encoding V4 region gene (≈250 nt) for each Operational Taxonomic Unit (OTU). This... -
Federal
Data from: Pyrosequencing-Based Analysis of the Microbiome Associated with the Horn Fly, Haematobia irritans
Department of Agriculture —
The bacterial 16S tag-encoded FLX-titanium amplicon pyrosequencing (bTEFAP) method was used to carry out the classification analysis of bacterial flora in adult... -
Federal
Drinking Water Microbiome Taxonomic Lineage Abundance Data Set
U.S. Environmental Protection Agency —
An abundance matrix (BM_taxonomic_lineage.xlsx) contains rows as taxonomic lineage, columns as samples, and entries representing the abundance of each lineage as a... -
Federal
Data from: Evaluating impacts of radiation-induced sterilization on the performance and gut microbiome of mass-reared Mediterranean fruit fly (Ceratitis capitata) in Hawai’i
Department of Agriculture —
Mediterranean fruit fly males reared for sterile insect technique (SIT) have been shown to have differences in their microbiomes relative to other population sources,... -
Federal
Drinking Water Microbiome OTU Abundance Data Set
U.S. Environmental Protection Agency —
An abundance matrix (BM_OTU.xlsx) contains rows as OTU, columns as samples, and entries representing the abundance of each OTU as a ratio of all sequences obtained... -
Federal
Data from: Tephritid fruit fly gut bacterial population and community dynamics following adult emergence
Department of Agriculture —
Data include microbial count data (CFUs), 16S-rRNA copy number data (qPCR), and microbial community (microbiome) data from the guts of the invasive tephritid fruit... -
Federal
Functional Profile of Sediment Layers
U.S. Environmental Protection Agency —
A table (DP_KEGG.xlsx) contains rows as KEGG Orthology (KO), columns as sediment layers, and entries representing the abundance of each KO. This dataset is associated... -
Federal
Data from: Full-length 16S rRNA sequencing on target microbe establishment in laboratory and mass-reared Mediterranean fruit fly
Department of Agriculture —
Study aim was to determine establishment success of antibiotic resistance bacteria in laboratory and mass-reared Mediterranean fruit fly (Ceratitis capitata).... -
Federal
Genes Encoding Key Enzymes for Nitrogen Metabolism in Sediment Layers
U.S. Environmental Protection Agency —
A table (DP_FAMA.xlsx) contains rows as nitrogen pathways genes, columns as sediment layers, and entries representing the abundance of each gene. This dataset is... -
Federal
Greywater Reuse - Microbial taxa
U.S. Environmental Protection Agency —
This provides taxonomic data (as relative abundances) derived from metagenomic sequencing of greywater samples. This dataset is associated with the following... -
Federal
CatronTara_A-brvd_MB2Dataset_20180221
U.S. Environmental Protection Agency —
This file contains data used to generate figures shown in Catron et al. Characterization of host toxicity and microbiota disruption in larval zebrafish following... -
Federal
Data for Weitekamp et al. "Triclosan-resistant host-associated microbiota perform xenobiotic biotransformations in larval zebrafish"
U.S. Environmental Protection Agency —
This file contains data used to generate figures shown in Weitekamp et al. Triclosan-resistant host-associated microbiota perform xenobiotic biotransformations in... -
Federal
Sequencing Data Set of Sediment Layers
U.S. Environmental Protection Agency —
A table (DP_SRA.xlsx) contains rows as sample and columns as entries representing the biosample accession number (NCBI), collection (date), library strategy, target... -
Federal
This file contains data used to generate figures shown in Phelps et al. Microbial colonization is required for normal neurobehavioral development in zebrafish. Scientific Reports. 2017.
U.S. Environmental Protection Agency —
Data used to generate figures shown in Phelps et al. This dataset is associated with the following publication: Phelps, D., N. Brinkman, S. Keely, E. Anneken, T.... -
Federal
Bioaccessibility of Arsenic from Contaminated Soils and Alteration of the Gut Microbiome in an In Vitro Gastrointestinal Model
U.S. Environmental Protection Agency —
Microbiome analyses. This dataset is associated with the following publication: Griggs, J., L. Chi, N. Hanley, M. Kohan, K. Herbin-Davis, D. Thomas, K. Lu, R. Fry,... -
Federal
Data from: Impact of larval food source on the stability of the <i>Bactrocera dorsalis </i>microbiome
Department of Agriculture —
We conducted a fly rearing experiment to characterize diet-induced changes in the microbiome of female Bactrocera dorsalis. In order to explicitly investigate the... -
Federal
16S and ITS amplicon sequencing of reconstructed wetland soil metagenomes
U.S. Environmental Protection Agency —
Experiments tested if changes in soil microbiomes within reconstructed freshwater wetlands were associated with exposure to elevated Cu concentrations originating... -
Federal
Data From: Effects of species and sex on the gut microbiome of four laboratory-reared fruit fly lines (Diptera: Tephritidae) using full-length 16S rRNA PacBio Kinnex sequencing
Department of Agriculture —
Species- and sex-related differences of four laboratory tephritid fruit fly (Diptera: Tephritidae) gut microbiomes evaluated with full-length 16S rRNA PacBio Kinnex...
44 datasets found