Drinking Water Microbiome OTU Abundance Data Set
An abundance matrix (BM_OTU.xlsx) contains rows as OTU, columns as samples, and entries representing the abundance of each OTU as a ratio of all sequences obtained for each individual sample.
This dataset is associated with the following publication:
Gomez-Alvarez, V., and R. Revetta. Monitoring of Nitrification in Chloraminated Drinking Water Distribution Systems With Microbiome Bioindicators Using Supervised Machine Learning. Frontiers in Microbiology. Frontiers, Lausanne, SWITZERLAND, 11: 2254-2267, (2020).
Resources
1 resource available
-
BM_OTU.xlsx
APPLICATION/VND.OPENXMLFORMATS-OFFICEDOCUMENT.SPREADSHEETML.SHEET
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Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[ "020:00" ] |
| contactPoint |
{ "fn": "Vicente Gomez-Alvarez", "hasEmail": "mailto:gomez-alvarez.vicente@epa.gov" } |
| description | An abundance matrix (BM_OTU.xlsx) contains rows as OTU, columns as samples, and entries representing the abundance of each OTU as a ratio of all sequences obtained for each individual sample. This dataset is associated with the following publication: Gomez-Alvarez, V., and R. Revetta. Monitoring of Nitrification in Chloraminated Drinking Water Distribution Systems With Microbiome Bioindicators Using Supervised Machine Learning. Frontiers in Microbiology. Frontiers, Lausanne, SWITZERLAND, 11: 2254-2267, (2020). |
| distribution |
[ { "title": "BM_OTU.xlsx", "mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet", "downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1369388/BM_OTU.xlsx" } ] |
| identifier | https://doi.org/10.23719/1369388 |
| keyword |
[ "16S rRNA", "OTU", "drinking water", "machine learning", "microbiome", "nitrification", "relative abundance" ] |
| license | https://pasteur.epa.gov/license/sciencehub-license.html |
| modified | 2017-07-06 |
| programCode |
[ "020:096" ] |
| publisher |
{ "name": "U.S. EPA Office of Research and Development (ORD)", "subOrganizationOf": { "name": "U.S. Environmental Protection Agency", "subOrganizationOf": { "name": "U.S. Government" } } } |
| references |
[ "https://doi.org/10.3389/fmicb.2020.571009" ] |
| rights |
null
|
| title | Drinking Water Microbiome OTU Abundance Data Set |
