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The bacterial 16S tag-encoded FLX-titanium amplicon pyrosequencing (bTEFAP) method was used to carry out the classification analysis of bacterial flora in adult female and male horn flies and horn...
Search relevance: 1.00 | Views last month: 9 | Catalog Last Checked: May 05, 2026 at 11:42 PM -
The fasta file (BM_OTU.fasta) contain the sequences of the bacterial 16S rRNA-encoding V4 region gene (≈250 nt) for each Operational Taxonomic Unit (OTU). This dataset is associated with the...
Search relevance: 1.00 | Views last month: 9 | Catalog Last Checked: April 21, 2026 at 08:00 PM -
An abundance matrix (BM_OTU.xlsx) contains rows as OTU, columns as samples, and entries representing the abundance of each OTU as a ratio of all sequences obtained for each individual sample....
Search relevance: 1.00 | Views last month: 6 | Catalog Last Checked: April 21, 2026 at 08:00 PM -
Study aim was to determine establishment success of antibiotic resistance bacteria in laboratory and mass-reared Mediterranean fruit fly (Ceratitis capitata). Experiments conducted in Hilo, HI,...
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Data include microbial count data (CFUs), 16S-rRNA copy number data (qPCR), and microbial community (microbiome) data from the guts of the invasive tephritid fruit flies, melon fly (Zeugodacus...
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Mediterranean fruit fly males reared for sterile insect technique (SIT) have been shown to have differences in their microbiomes relative to other population sources, which has been postulated to...
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Species- and sex-related differences of four laboratory tephritid fruit fly (Diptera: Tephritidae) gut microbiomes evaluated with full-length 16S rRNA PacBio Kinnex sequencing. Insect gut...
Search relevance: 1.00 | Views last month: 3 | Catalog Last Checked: May 05, 2026 at 11:40 PM -
These microbiome data and analyses are part of a DNA amplicon sequencing project performed by USDA-ARS scientists at the Foreign-Disease Weed Science Research Unit in Frederick, Maryland. The data...
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We conducted a fly rearing experiment to characterize diet-induced changes in the microbiome of female Bactrocera dorsalis. In order to explicitly investigate the impacts of larval diet on the...
Search relevance: 1.00 | Views last month: 3 | Catalog Last Checked: June 12, 2026 at 11:17 PM -
White-nose syndrome (WNS), a fungal disease that has caused catastrophic population declines of bats in eastern North America, is rapidly spreading across the continent and now threatens...
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This repository contains raw and intermediate data files as well as analysis code from the manuscript "Evaluating the Analytical Performance of Direct-to-Consumer Gut Microbiome Testing Services"....
Search relevance: 1.00 | Views last month: 2 | Catalog Last Checked: August 02, 2025 at 03:39 PM -
A table (DP_OTU.xlsx) contains rows as OTUs, columns as samples, and entries representing the abundance of each OTU. This dataset is associated with the following publication: Gomez-Alvarez, V.,...
Search relevance: 1.00 | Views last month: 2 | Catalog Last Checked: April 21, 2026 at 08:01 PM -
North American bats have experienced catastrophic population declines from white-nose syndrome (WNS), a fungal disease caused by Pseudogymnoascus destructans (Pd). Although Pd can infect many...
Search relevance: 1.00 | Views last month: 1 | Catalog Last Checked: May 05, 2026 at 07:51 PM -
A table (DP_FAMA.xlsx) contains rows as nitrogen pathways genes, columns as sediment layers, and entries representing the abundance of each gene. This dataset is associated with the following...
Search relevance: 1.00 | Views last month: 1 | Catalog Last Checked: April 21, 2026 at 08:01 PM -
Sustainable culture of sablefish (Anoplopoma fimbria) is an active research area at NWFSC, with a primary objective of rearing a human food source under healthy, economic, and sustainable...
Search relevance: 1.00 | Views last month: 1 | Catalog Last Checked: May 14, 2026 at 07:20 AM -
The objective of this study was to explore the R. microplus microbiome by applying the bacterial 16S tag-encoded FLX-titanium amplicon pyrosequencing (bTEFAP) technique to characterize its...
Search relevance: 1.00 | Views last month: 1 | Catalog Last Checked: May 05, 2026 at 11:40 PM -
An abundance matrix (BM_taxonomic_lineage.xlsx) contains rows as taxonomic lineage, columns as samples, and entries representing the abundance of each lineage as a ratio of all sequences obtained...
Search relevance: 1.00 | Views last month: 1 | Catalog Last Checked: April 21, 2026 at 08:00 PM -
This data release includes the 16S whole-organism sequencing data for larval aquatic insects, emergent adult insects, and two riparian spiders from upstream and downstream sites of a PFAS (per-...
Search relevance: 1.00 | Views last month: 0 | Catalog Last Checked: May 31, 2026 at 06:50 PM -
Across taxa, animals with depleted intestinal microbiomes show disrupted behavioral phenotypes. Axenic (i.e., microbe-free) mice, zebrafish, and fruit flies exhibit increased locomotor behavior,...
Search relevance: 1.00 | Views last month: 0 | Catalog Last Checked: April 21, 2026 at 08:00 PM -
A table (DP_KEGG.xlsx) contains rows as KEGG Orthology (KO), columns as sediment layers, and entries representing the abundance of each KO. This dataset is associated with the following...
Search relevance: 1.00 | Views last month: 0 | Catalog Last Checked: April 21, 2026 at 08:01 PM
