Drinking Water Microbiome Sequence Data Set
The fasta file (BM_OTU.fasta) contain the sequences of the bacterial 16S rRNA-encoding V4 region gene (≈250 nt) for each Operational Taxonomic Unit (OTU).
This dataset is associated with the following publication:
Gomez-Alvarez, V., and R. Revetta. Monitoring of Nitrification in Chloraminated Drinking Water Distribution Systems With Microbiome Bioindicators Using Supervised Machine Learning. Frontiers in Microbiology. Frontiers, Lausanne, SWITZERLAND, 11: 2254-2267, (2020).
Resources
2 resources available
-
https://www.ncbi.nlm.nih.gov/sra/?term=SRP069876
FILE -
BM_OTU.fasta.zip
APPLICATION/X-ZIP-COMPRESSED
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Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[
"020:00"
]
|
| contactPoint |
{
"fn": "Vicente Gomez-Alvarez",
"hasEmail": "mailto:gomez-alvarez.vicente@epa.gov"
}
|
| description | The fasta file (BM_OTU.fasta) contain the sequences of the bacterial 16S rRNA-encoding V4 region gene (≈250 nt) for each Operational Taxonomic Unit (OTU). This dataset is associated with the following publication: Gomez-Alvarez, V., and R. Revetta. Monitoring of Nitrification in Chloraminated Drinking Water Distribution Systems With Microbiome Bioindicators Using Supervised Machine Learning. Frontiers in Microbiology. Frontiers, Lausanne, SWITZERLAND, 11: 2254-2267, (2020). |
| distribution |
[
{
"title": "https://www.ncbi.nlm.nih.gov/sra/?term=SRP069876",
"accessURL": "https://www.ncbi.nlm.nih.gov/sra/?term=SRP069876"
},
{
"title": "BM_OTU.fasta.zip",
"mediaType": "application/x-zip-compressed",
"downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1369387/BM_OTU.fasta.zip"
}
]
|
| identifier | https://doi.org/10.23719/1369387 |
| keyword |
[
"16S rRNA",
"OTU",
"drinking water",
"machine learning",
"microbial communities",
"microbiome",
"nitrification"
]
|
| license | https://pasteur.epa.gov/license/sciencehub-license.html |
| modified | 2017-07-06 |
| programCode |
[
"020:096"
]
|
| publisher |
{
"name": "U.S. EPA Office of Research and Development (ORD)",
"subOrganizationOf": {
"name": "U.S. Environmental Protection Agency",
"subOrganizationOf": {
"name": "U.S. Government"
}
}
}
|
| references |
[
"https://doi.org/10.3389/fmicb.2020.571009"
]
|
| rights |
null
|
| title | Drinking Water Microbiome Sequence Data Set |
