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Federal
Ricebase
Department of Agriculture —
Ricebase (https://ricebase.org) is an integrative genomic database for rice (Oryza sativa) with an emphasis on combining datasets in a way that maintains the key... -
Federal
Releases of Beneficial Organisms in the United States and Territories (ROBO) database
Department of Agriculture —
The Releases Of Beneficial Organisms (ROBO) database consists of documented importations and releases of beneficial insects, mites, and microorganisms, as biological... -
Federal
Pulse Crop Database Resources
Department of Agriculture —
Genomic, Genetic and Breeding Resources for Pulse Crop Improvement. Crops supported include Adzuki bean, Bambara bean, Chickpea, Common bean, Cowpea, Faba bean,... -
Federal
Raw Sequences of 17 Aspergillus Genomes from Ethiopia
Department of Agriculture —
Raw genome sequencing data of 17 isolates of Aspergillus flavus and Aspergillus parasiticus collected from peanuts from Ethiopia. These isolates were selected as... -
Federal
The Triticeae Toolbox
Department of Agriculture —
The Triticeae Toolbox (T3) webportal hosts data generated by the Triticeae Coordinated Agricultural Project (CAP), funded by the National Institute for Food and... -
Federal
SoyBase and the Soybean Breeder's Toolbox
Department of Agriculture —
SoyBase is a repository for genetics, genomics and related data resources for soybean. It contains current genetic, physical and genomic sequence maps integrated with... -
Federal
Switchgrass ESTs and SNPs
Department of Agriculture —
As part of our project, “Developing Association Mapping in Polyploid Perennial Biofuel Grasses” (DOE-USDA Plant Feedstock Genomics for Bioenergy Program grant... -
Federal
USDA ARS National Rhizobium Germplasm Collection
Department of Agriculture —
Our mission is to support application of low-input sustainable agriculture by: Providing, to the best of our ability, technical information about rhizobia, their... -
Federal
CottonGen JBrowse
Department of Agriculture —
CottonGen has an instance of the JBrowse genome browser for viewing genome data. A list of the genomes available in CottonGen can be accessed by clicking the JBrowse... -
Federal
CottonGen Synteny Viewer
Department of Agriculture —
Conserved syntenic regions among publicly available cotton genomes were analyzed by CottonGen and made available using the Tripal Synteny Viewer developed by the Fei... -
Federal
CottonGen CottonCyc Pathways Database
Department of Agriculture —
The CottonGen CottonCyc Pathways Database, part of CottonGen, supports searching and browsing the following CottonCyc databases: Cyc pathways for JGI v2.0 G.... -
Federal
CottonGen Sequence Retrieval
Department of Agriculture —
Sequence Retrieval allows users to download nucleotide and protein sequences including chromosomes, scaffolds, genes, mRNAs, transcript coding sequences, protein,... -
Federal
CottonGen Primer3
Department of Agriculture —
Primer3web version 4.0.0 allows users to pick PCR primers from a DNA sequence based on criteria including: oligonucleotide melting temperature, size, GC content, and... -
Federal
CottonGen BLAST
Department of Agriculture —
CottonGen offers BLAST with genome, transcriptome, peptide and marker sequence databases from Gossypium species. This can be done using nucleotide sequences or... -
Federal
Data from: A Community Resource for Exploring and Utilizing Genetic Diversity in the USDA Pea Single Plant Plus Collection
Department of Agriculture —
Included in this dataset are SNP and fasta data for the Pea Single Plant Plus Collection (PSPPC) and the PSPPC augmented with 25 P. fulvum accessions. These 6... -
Federal
Data from: A First Look at the Ability to Use Genomic Prediction for Improving Ratooning Ability of Sugarcane
Department of Agriculture —
The filtered VCF file of 10501 SNPs from the 432 individuals in this study. This dataset was used for genome-wide association study (GWAS) and genomic prediction of... -
Federal
Data from: Data for the calculation of an indicator of the comprehensiveness of conservation of useful wild plants
Department of Agriculture —
The datasets and code presented in this Data in Brief article are related to the research article entitled "Comprehensiveness of conservation of useful wild plants:... -
Federal
Data from: Cover cropping history affects cotton boll distribution, lint yields, and fiber quality
Department of Agriculture —
This is digital research data corresponding to a published manuscript, Cover cropping history affects cotton boll distribution, lint yields, and fiber quality, in...