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    • CottonGen Sequence Retrieval

    Metadata Updated: April 21, 2025

    Sequence Retrieval allows users to download nucleotide and protein sequences including chromosomes, scaffolds, genes, mRNAs, transcript coding sequences, protein, reftrans contigs and unigene contigs. For the sequences aligned to larger sequences, such as genes, mRNAs and transcript coding sequences, a numeric value specifying the number of upstream bases and downstream bases can be entered. A video and text tutorial are provided for additional help information. Resources in this dataset:Resource Title: Website Pointer for Cottongen Sequence Retrieval. File Name: Web Page, url: https://www.cottongen.org/retrieve/sequences Sequence Retrieval allows users to download nucleotide and protein sequences including chromosomes, scaffolds, genes, mRNAs, transcript coding sequences, protein, reftrans contigs and unigene contigs. For the sequences aligned to larger sequences, such as genes, mRNAs and transcript coding sequences, a numeric value specifying the number of upstream bases and downstream bases can be entered. A video and text tutorial are provided for additional help information. Available Datasets:

    Gossypioides kirkii genome ISU Assembly v1.0 & Annotation v1.0 Gossypium arboreum (A2) Genome BGI Assembly v2.0 & Annotation v1.0 Gossypium arboreum (A2) genome CRI-Updated Assembly v1.0 & Annotation v1.0 Gossypium arboreum CottonGen RefTrans V1 Gossypium barbadense (AD2) Genome HAU Assembly v2.0 & Annotation v1.0 Gossypium barbadense (AD2) Genome HAU-SGI Assembly v1.0 & Annotation v1.0 Gossypium barbadense (AD2) Hai7124 genome ZJU Assembly v1.1 & Annotation a1 Gossypium barbadense CottonGen RefTrans V1 Gossypium hirsutum (AD1) Genome CGP-BGI Assembly v1.0 & Annotation v1.0 Gossypium hirsutum (AD1) Genome HAU Assembly v1.0 & Annotation a1.0 / v1.1 a1.1 Gossypium hirsutum (AD1) Genome NAU-NBI Assembly v1.1 & Annotation v1.1 Gossypium hirsutum (AD1) Genome - Texas Interim release UTX-JGI v1.1 Gossypium hirsutum (AD1) genome ZJU-Improved Assembly v2.1 & Annotation a1.0 Gossypium hirsutum CottonGen RefTrans V1 Gossypium raimondii CottonGen RefTrans V1 Gossypium raimondii (D5) Draft Genome BGI-CGP v1.0 Assembly & Annotation Gossypium raimondii (D5) genome BYU Assembly v1 & Annotation a1 Gossypium raimondii (D5) genome JGI assembly v2.0 (annot v2.1) Gossypium thurberi (D1) Genome ISU Assembly v1.0 Gossypium turneri (D10) genome BYU Assembly v1 & Annotation a2

    Access & Use Information

    Public: This dataset is intended for public access and use. License: us-pd

    Downloads & Resources

    Dates

    Metadata Created Date March 30, 2024
    Metadata Updated Date April 21, 2025

    Metadata Source

    Harvested from USDA JSON

    Other Data Resources

    Additional Metadata

    Resource Type Dataset
    Metadata Created Date March 30, 2024
    Metadata Updated Date April 21, 2025
    Publisher Agricultural Research Service
    Maintainer
    Identifier 10113/AA23044
    Data Last Modified 2024-02-13
    Public Access Level public
    Bureau Code 005:18
    Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
    Schema Version https://project-open-data.cio.gov/v1.1/schema
    Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
    Harvest Object Id 39e4a112-0421-4040-8ea2-0540054dfcd4
    Harvest Source Id d3fafa34-0cb9-48f1-ab1d-5b5fdc783806
    Harvest Source Title USDA JSON
    License https://www.usa.gov/publicdomain/label/1.0/
    Program Code 005:040
    Source Datajson Identifier True
    Source Hash 68622661dc6c7ac97c7917357a70eeeca736a9dff7d7ef60eb1a0d89eceba7ec
    Source Schema Version 1.1

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