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    • CottonGen CottonCyc Pathways Database

    Metadata Updated: April 21, 2025

    The CottonGen CottonCyc Pathways Database, part of CottonGen, supports searching and browsing the following CottonCyc databases:

    Cyc pathways for JGI v2.0 G. raimondii D5 genome assembly

    This Cyc database was constructed using PathwayTools version 20.0 using the gene models from the JGI v2.0 D5 genome assembly of Gossypium raimondii. There has been no manual curation of this Cyc database. Pathway predictions were made using PathwayTools and in-silico v2.1 annotations as provided by JGI.

    Cyc pathways for CGP-BGI v1.0 G. hirsutum AD1 genome assembly

    This Cyc database was constructed using PathwayTools version 20.0 using the gene models from the CGP-BGI v1.0 AD1 genome assembly of Gossypium hirsutum. There has been no manual curation of this Cyc database. Pathway predictions were made using PathwayTools and in-silico v1.0 annotations as provided by CGP-BGI. Search parameters include genes, proteins, RNAs, compounds, reactions, pathways, growth media, and BLAST search. Resources in this dataset:Resource Title: Website Pointer to CottonGen CottonCyc Pathways Database. File Name: Web Page, url: http://ptools.cottongen.org/

    Access & Use Information

    Public: This dataset is intended for public access and use. License: us-pd

    Downloads & Resources

    Dates

    Metadata Created Date March 30, 2024
    Metadata Updated Date April 21, 2025

    Metadata Source

    Harvested from USDA JSON

    Other Data Resources

    Additional Metadata

    Resource Type Dataset
    Metadata Created Date March 30, 2024
    Metadata Updated Date April 21, 2025
    Publisher Agricultural Research Service
    Maintainer
    Identifier 10113/AA22863
    Data Last Modified 2023-12-18
    Public Access Level public
    Bureau Code 005:18
    Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
    Schema Version https://project-open-data.cio.gov/v1.1/schema
    Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
    Harvest Object Id 550360eb-911f-48e5-8ea0-96faf0de3138
    Harvest Source Id d3fafa34-0cb9-48f1-ab1d-5b5fdc783806
    Harvest Source Title USDA JSON
    License https://www.usa.gov/publicdomain/label/1.0/
    Program Code 005:040
    Source Datajson Identifier True
    Source Hash d8d60d30e8f6eec4cfe45d46632fd01201b607bbb07189647e8b0d9cb67ad9cc
    Source Schema Version 1.1

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