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    • CottonGen JBrowse

    Metadata Updated: March 30, 2024

    CottonGen has an instance of the JBrowse genome browser for viewing genome data. A list of the genomes available in CottonGen can be accessed by clicking the JBrowse link in the Tools menu. Whole Genomes

    2019-03: Gossypium barbadense AD2 Hai-7124 genome ZJU v1.1_a1 2018-12: Gossypium barbadense AD2 3-79 genome HAU v2_a1 2015-12: Gossypium barbadense AD2 3-79 genome HAU v1_a1 2019-03: Gossypium hirsutum AD1 genome ZJU-Improved v2.1_a1 2018-12: Gossypium hirsutum AD1 genome HAU v1_a1 2017-09: Gossypium hirsutum AD1 genome TX-JGI v1.1_a1 2015-04: Gossypium hirsutum AD1 genome NAU-NBI v1.1_a1.1 2015-04: Gossypium hirsutum AD1 genome CGP-BGI v1_a1 2018-05: Gossypium arboreum A2 genome CRI-Updated v1_a1 2014-05: Gossypium arboreum A2 genome CGP-BGI v2_a1 2012-12: Gossypium raimondii D5 genome JGI v2_a2.1 2012-08: Gossypium raimondii D5 genome CGP-BGI v1_a1

    Chloroplast Genomes

    Gossypium arboreum chloroplast Gossypium barbadense chloroplast Gossypium hirsutum chloroplast Gossypium raimondii chloroplast

    Please watch the JBrowse tutorial for more details about how to navigate and use JBrowse. Resources in this dataset:Resource Title: CottonGen JBrowse and User Manual. File Name: Web Page, url: https://www.cottongen.org/node/8287911 CottonGen has an instance of the JBrowse genome browser for viewing genome data. A list of the genomes available in CottonGen can be accessed by clicking the JBrowse link in the Tools menu.

    Whole Genomes

    • 2019-03: Gossypium barbadense AD2 Hai-7124 genome ZJU v1.1_a1
    • 2018-12: Gossypium barbadense AD2 3-79 genome HAU v2_a1
    • 2015-12: Gossypium barbadense AD2 3-79 genome HAU v1_a1
    • 2019-03: Gossypium hirsutum AD1 genome ZJU-Improved v2.1_a1
    • 2018-12: Gossypium hirsutum AD1 genome HAU v1_a1
    • 2017-09: Gossypium hirsutum AD1 genome TX-JGI v1.1_a1
    • 2015-04: Gossypium hirsutum AD1 genome NAU-NBI v1.1_a1.1
    • 2015-04: Gossypium hirsutum AD1 genome CGP-BGI v1_a1
    • 2018-05: Gossypium arboreum A2 genome CRI-Updated v1_a1
    • 2014-05: Gossypium arboreum A2 genome CGP-BGI v2_a1
    • 2012-12: Gossypium raimondii D5 genome JGI v2_a2.1
    • 2012-08: Gossypium raimondii D5 genome CGP-BGI v1_a1

    Chloroplast Genomes

    • Gossypium arboreum chloroplast
    • Gossypium barbadense chloroplast
    • Gossypium hirsutum chloroplast
    • Gossypium raimondii chloroplast

    Please watch the JBrowse tutorial for more details about how to navigate and use JBrowse.

    Access & Use Information

    Public: This dataset is intended for public access and use. License: us-pd

    Downloads & Resources

    Dates

    Metadata Created Date March 30, 2024
    Metadata Updated Date March 30, 2024

    Metadata Source

    Harvested from USDA JSON

    Other Data Resources

    Additional Metadata

    Resource Type Dataset
    Metadata Created Date March 30, 2024
    Metadata Updated Date March 30, 2024
    Publisher Agricultural Research Service
    Maintainer
    Identifier 10113/AA23033
    Data Last Modified 2024-02-13
    Public Access Level public
    Bureau Code 005:18
    Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
    Schema Version https://project-open-data.cio.gov/v1.1/schema
    Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
    Harvest Object Id 20f888ed-6ff0-4223-a1ed-6b66d158d142
    Harvest Source Id d3fafa34-0cb9-48f1-ab1d-5b5fdc783806
    Harvest Source Title USDA JSON
    License https://www.usa.gov/publicdomain/label/1.0/
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