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Defining the Taxonomic Domain of Applicability for Mammalian-Based High-Throughput Screening Assays

Metadata Updated: November 12, 2020

Final Data SeqAPASS v3.0.zip contains datasets from Sequence Alignment to Predict Across Species Susceptibility (SeqAPASS) tool versions 3.0 for all 497 proteins evaluated using Level 1 (primary amino acid sequence comparisons) and Level 2 (functional domain(s) sequence comparisons) to understand conservation of HTS targets across species. Each folder is labeled by the protein accession (identification number and SeqAPASS version), with subfolders containing Level 1 and Level 2 output from the SeqAPASS tool. SeqAPASS v3.0 Data in Assay Groups.zip Contains all SeqAPASS data sorted by ToxCast Assay Group (as described in manuscript materials and methods). The original SeqAPASS data for each assay group are found in the folders titled Cell Adhesion, Cytochrome P450, Cytokine, DNA Binding, Esterase, G protein-coupled receptor, Growth Factor, Hydrolase, Ion Channel, Kinase, Lyase, Methyltransferase, Nuclear Receptor, Oxidoreductase, Phophatase, Protease, Protease Inhibitor, and Transporter. The Data_L1_Output folders and Data_L2_Output folders provide summaries of the Level 1 and Level 2 data comparing across datasets (See manuscript Supplemental Data, Legend for further details).

This dataset is associated with the following publication: LaLone, C., D. Villeneuve, J. Doering, B. Blackwell, T. Transue, C. Simmons, J. Swintek, S. Degitz, A. Williams, and G. Ankley. Defining the taxonomic domain of applicability for mammalian-based high-throughput screening assays.. ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 52(23): 13960-13971, (2018).

Access & Use Information

Public: This dataset is intended for public access and use. License: See this page for license information.

Downloads & Resources

References

https://doi.org/10.23719/1432209

Dates

Metadata Created Date November 12, 2020
Metadata Updated Date November 12, 2020

Metadata Source

Harvested from EPA ScienceHub

Additional Metadata

Resource Type Dataset
Metadata Created Date November 12, 2020
Metadata Updated Date November 12, 2020
Publisher U.S. EPA Office of Research and Development (ORD)
Maintainer
Identifier https://doi.org/10.23719/1432209
Data Last Modified 2018-04-09
Public Access Level public
Bureau Code 020:00
Schema Version https://project-open-data.cio.gov/v1.1/schema
Data Dictionary https://pasteur.epa.gov/uploads/10.23719/1432209/documents/Data%20Dictionary%232.docx
Data Dictionary Type application/vnd.openxmlformats-officedocument.wordprocessingml.document
Harvest Object Id c05f5f94-60ac-4dfb-9280-e7164323a9bb
Harvest Source Id 04b59eaf-ae53-4066-93db-80f2ed0df446
Harvest Source Title EPA ScienceHub
License https://pasteur.epa.gov/license/sciencehub-license.html
Program Code 020:095
Publisher Hierarchy U.S. Government > U.S. Environmental Protection Agency > U.S. EPA Office of Research and Development (ORD)
Related Documents https://doi.org/10.23719/1432209
Source Datajson Identifier True
Source Hash a2e4349369d766cca32ca8e1dd2c122466ef5f11
Source Schema Version 1.1

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