Skip to main content
U.S. flag

An official website of the United States government

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you’ve safely connected to the .gov website. Share sensitive information only on official, secure websites.

Skip to content

Data from: Genome Sequence of the Thermotolerant Foodborne Pathogen Salmonella enterica Serovar Senftenberg ATCC 43845 and Phylogenetic Analysis of Loci Encoding Increased Protein Quality Control Mechanisms

Metadata Updated: March 30, 2024

Salmonella enterica subsp. enterica bacteria are important foodborne pathogens with major economic impact. Some isolates exhibit increased heat tolerance, a concern for food safety. Analysis of a finished-quality genome sequence of an isolate commonly used in heat resistance studies, S. enterica subsp. enterica serovar Senftenberg 775W (ATCC 43845), demonstrated an interesting observation that this strain contains not just one, but two horizontally acquired thermotolerance locus homologs. These two loci reside on a large 341.3-kbp plasmid that is similar to the well-studied IncHI2 R478 plasmid but lacks any antibiotic resistance genes found on R478 or other IncHI2 plasmids. As this historical Salmonella isolate has been in use since 1941, comparative analysis of the plasmid and of the thermotolerance loci contained on the plasmid will provide insight into the evolution of heat resistance loci as well as acquisition of resistance determinants in IncHI2 plasmids. Resources in this dataset:Resource Title: Supplementary Material. File Name: "inline-supplementary-material-1.pdf", url: https://msystems.asm.org/content/msys/2/1/e00190-16/DC1/embed/inline-supplementary-material-1.pdf The map of plasmid pSSE ATCC-43845 is shown, with the thermotolerance locus islands indicated as orange regions. Base modification signals generated by BaseModFunctions.v.2.1.R and Circos are overlaid on the plasmid map. Qmod values are height proportional to the interpulse distance ratio for each of the modified bases on the positive strand (red outmost track) and negative strand (red innermost track). Green hash marks correspond to the CAGAG motifs present on the plasmid. The map of plasmid pSSE ATCC-43845 is shown, with the thermotolerance locus islands indicated as orange regions. Base modification signals generated by BaseModFunctions v2.1.R and Circos are overlaid on the plasmid map. Qmod values are height proportional to the interpulse distance ratio for each of the modified bases on the positive strand (red outmost track) and negative strand (red innermost track). Blue hash marks correspond to the GATC motifs present on the plasmid.

Access & Use Information

Public: This dataset is intended for public access and use. License: Creative Commons Attribution

Downloads & Resources

Dates

Metadata Created Date March 30, 2024
Metadata Updated Date March 30, 2024

Metadata Source

Harvested from USDA JSON

Additional Metadata

Resource Type Dataset
Metadata Created Date March 30, 2024
Metadata Updated Date March 30, 2024
Publisher Agricultural Research Service
Maintainer
Identifier 10.1128/mSystems.00190-16
Data Last Modified 2023-12-18
Public Access Level public
Bureau Code 005:18
Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
Schema Version https://project-open-data.cio.gov/v1.1/schema
Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
Harvest Object Id 052bf56b-8ade-4426-9144-ab2c213b834f
Harvest Source Id d3fafa34-0cb9-48f1-ab1d-5b5fdc783806
Harvest Source Title USDA JSON
License https://creativecommons.org/licenses/by/4.0/
Program Code 005:040
Source Datajson Identifier True
Source Hash e8c886f10c4376db47a6496aa2995906099af26f7a1ce17ea14dd6893aeff79f
Source Schema Version 1.1

Didn't find what you're looking for? Suggest a dataset here.