22 datasets found
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Federal
Data from: Temporal and agricultural factors influence E. coli survival in soil and transfer to cucumbers recent views
Department of Agriculture —
Escherichia coli survival in soils containing either composted poultry litter (CPL), heat-treated poultry pellets (HTPP), poultry litter (PL) or unamended (chemical... -
Federal
Minimum Inhibitory Concentration (MIC) data for third generation cephalosporin resistant E. coli and extended spectrum beta-lactamase producing Enterobacteriaceae from feedlot cattle recent views
Department of Agriculture —
The data presents the antimicrobial susceptibility testing results in three separate files: 1) third generation cephalosporin resistant E. coli isolates obtained on... -
Federal
Persistence of antibiotic resistance genes in beef cattle backgrounding environment after cessation of operation recent views
Department of Agriculture —
Datasheet for the abundance of total bacteria, gram positive indicator bacteria, horizontal gene transfer indicator genes and antibiotic resistance genes in the soil... -
Federal
Comparison of methods to detect low levels of Salmonella enterica in surface waters to support antimicrobial resistance surveillance efforts performed in multiple laboratories recent views
Department of Agriculture —
Identifying and developing effective and sensitive detection methods for antimicrobial resistant Salmonella enterica from surface water is a goal of the U.S. National... -
Federal
Data and code from: Use of automated capillary immunoassay for quantification of antibodies in chicken sera against recombinant Salmonella enterica serotype Heidelberg proteins recent views
Department of Agriculture —
This entry contains all data and code required to reproduce the analysis of immune response data presented in the manuscript: Yeh, H.-Y., J. G. Frye, C. R. Jackson,... -
Federal
ComBase: A Web Resource for Quantitative and Predictive Food Microbiology recent views
Department of Agriculture —
ComBase includes a systematically formatted database of quantified microbial responses to the food environment with more than 65,000 records, and is used for:... -
Federal
Data from: An In Vitro Combined Antibiotic-Antibody Treatment Eliminates Toxicity from Shiga Toxin-Producing Escherichia coli recent views
Department of Agriculture —
Treating Shiga toxin-producing Escherichia coli (STEC) gastrointestinal infections is difficult. The utility of antibiotics for STEC treatment is controversial, since... -
Federal
Data from: Genome Sequence of the Thermotolerant Foodborne Pathogen Salmonella enterica Serovar Senftenberg ATCC 43845 and Phylogenetic Analysis of Loci Encoding Increased Protein Quality Control Mechanisms recent views
Department of Agriculture —
Salmonella enterica subsp. enterica bacteria are important foodborne pathogens with major economic impact. Some isolates exhibit increased heat tolerance, a concern... -
Federal
IncA-C Alignment recent views
Department of Agriculture —
IncA/C plasmids are a class of plasmids from Enterobacteraciae that are relatively large (49 to >180 kbp), are readily transferred by conjugation, and carry... -
Federal
Single-cell RNA sequencing data and resources from blood and milk immune cells of Holstein cattle with chronic mastitis caused by experimental <i>Staphylococcus aureus</i> infection recent views
Department of Agriculture —
This online resource provides supplementary items used to analyze data in the work, "Single-cell RNA sequencing characterization of Holstein cattle blood and milk... -
Federal
Data and code from: Buffered peptone water formulation does not influence growth of pESI positive Salmonella serovar Infantis recent views
Department of Agriculture —
This repository contains all data and code required to reproduce the growth curve-fitting analysis from the manuscript: McMillan, E. A., Berrang, M. E., Read, Q. D.,... -
Federal
Regional epithelial cell diversity in the small intestine of pigs recent views
Department of Agriculture —
Single cell suspensions enriched for epithelial cells were obtained from duodenum, jejunum, and ileum of a 7.5-week-old pig and subjected to single-cell RNA... -
Federal
Data from: The Biology of IncI2 Plasmids Shown by Whole-Plasmid Multi-Locus Sequence Typing recent views
Department of Agriculture —
DNA sequences of each allele for 165 loci found in a population of 147 fully sequenced IncI2 plasmids with allelic identifiers.Data is based on whole-genome sequences... -
Federal
Conserved B cell signaling, activation, and differentiation in porcine jejunal and ileal Peyer's patches despite distinct immune landscapes recent views
Department of Agriculture —
This dataset contains files used in the manuscript, "Conserved B cell signaling, activation, and differentiation in porcine jejunal and ileal Peyer's patches despite... -
Federal
Data from: Reference transcriptomics of porcine peripheral immune cells created through bulk and single-cell RNA sequencing recent views
Department of Agriculture —
This dataset contains files reconstructing single-cell data presented in 'Reference transcriptomics of porcine peripheral immune cells created through bulk and... -
Federal
Data from: Use of long-read sequencing simulators to assess real-world applications for food safety recent views
Department of Agriculture —
Shiga toxin-producing Escherichia coli (STEC) and Listeria monocytogenes are responsible for severe foodborne illnesses in the United States. Current identification... -
Federal
Data from: Draft genome sequences of eight streptogramin-resistant Enterococcus species isolates from animal and environmental sources in the United States recent views
Department of Agriculture —
Draft genome sequences of five Enterococcus faecium, two Enterococcus hirae, and one Enterococcus gallinarum from enviromental sources and chicken carcass rinsates.... -
Federal
Data and code from: Identification of a key target for elimination of nitrous oxide, a major greenhouse gas recent views
Department of Agriculture —
Note: Data files will be made available upon manuscript publication This dataset contains all code and data needed to reproduce the analyses in the manuscript:... -
Federal
Data from: Porcine intestinal innate lymphoid cells and lymphocyte spatial context revealed through single-cell RNA sequencing recent views
Department of Agriculture —
Files pertaining to data analyses performed and presented in the preprint, 'Porcine intestinal innate lymphoid cells and lymphocyte spatial context revealed through... -
Federal
Data from: Genomic Sequence of Campylobacter jejuni subsp. jejuni HS:19 Penner Serotype Reference Strain RM3420 recent views
Department of Agriculture —
Campylobacter jejuni subsp. jejuni infections are a leading cause of foodborne gastroenteritis and the most prevalent antecedent to Guillain-Barré syndrome (GBS)....
22 datasets found