18 datasets found
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Federal
Drinking Water Microbiome Sequence Data Set
U.S. Environmental Protection Agency —
The fasta file (BM_OTU.fasta) contain the sequences of the bacterial 16S rRNA-encoding V4 region gene (≈250 nt) for each Operational Taxonomic Unit (OTU). This... -
Federal
Resilience of Microbial Communities Taxonomic Lineage Abundance Data Set
U.S. Environmental Protection Agency —
An abundance matrix (EX_taxonomic_lineage.xlsx) contains rows as taxonomic lineage, columns as samples, and entries representing the abundance of each lineage as a... -
Federal
Oriental Bittersweet Microbial Communities Across a Post Glacial Successional Gradient at Indiana Dunes National Park, 2017
Department of the Interior —
This data release contains soil and vegetation data collected along a post glacial chronosequence associated with populations of oriental bittersweet (Celastrus... -
Federal
Vertical stratification of the water microbiome in an electric water heater tank
U.S. Environmental Protection Agency —
The raw sequence reads have been submitted to the NCBI Sequence Read Archive (SRA) under the BioProject PRJNA961987 with the following BioSample numbers:... -
Federal
Resilience of Microbial Communities Sequence Data Set
U.S. Environmental Protection Agency —
The EX_Genome_Assemblies.zip file contain the contig sequences (i.e. assembly) of fifteen isolates used for genomic and antibiotic resistance genes (ARG) analysis.... -
Federal
Microbial communities and bacterial indicators for shoreline sand, sediment, and water in Racine, Wisconsin; Chicago, Illinois; and East Chicago, Indiana; 2016-2017
Department of the Interior —
The data associated with the following data release were collected between 2016 and 2017 at three locations on Lake Michigan: Racine, WI; Chicago, IL; and East... -
Federal
Pilot-scale simulators and metagenomic to understand the storage tank ecosystem (JAWWA)
U.S. Environmental Protection Agency —
An abundance matrix (Table - 16S rRNA taxonomy.xlsx) contains rows as taxonomic lineage, columns as samples, and entries representing the abundance of each lineage as... -
Federal
Metropolitan DWDS Sequence Data Set
U.S. Environmental Protection Agency —
PS_GenBank.fasta file contain the sequences of the bacterial 16S rRNA-encoding gene for each representative sequence. The sequence containing four hypervariable... -
Federal
Bacterial discrimination by means of a universal array approach mediated by LDR (ligase detection reaction)
U.S. Department of Health & Human Services —
Background PCR amplification of bacterial 16S rRNA genes provides the most comprehensive and flexible means of sampling bacterial communities. Sequence analysis of... -
Federal
16S rRNA gene sequencing and E. coli for shorelines and the Grand Calumet River, Indiana, 2015, (version 2.0, July 2019)
Department of the Interior —
Data were collected in August and September 2015 for analysis of bacteria communities of the Grand Calumet River and associated shorelines. Water samples were... -
Federal
Nuisance algae: Planktonic communities in the Grand Calumet River Area of Concern, Indiana, 2021
Department of the Interior —
The data being released were part of a project funded by the United States Environmental Protection Agency (USEPA). This study sought to identify the bacterial and... -
Federal
Influence of filter pore size on microbial communities and microbial source tracking (MST) markers on water in Racine, Wisconsin; Chicago, Illinois; East Chicago, Indiana, 2015-2017
Department of the Interior —
The data being released were part of a project funded by the Great Lakes Restoration Initiative (GLRI). This study sought to examine the influence of filter pore size... -
Federal
16S and ITS amplicon sequencing of reconstructed wetland soil metagenomes
U.S. Environmental Protection Agency —
Experiments tested if changes in soil microbiomes within reconstructed freshwater wetlands were associated with exposure to elevated Cu concentrations originating... -
Federal
Resilience of Microbial Communities OTU Abundance Data Set
U.S. Environmental Protection Agency —
An abundance matrix (EX_OTU.xlsx) contains rows as OTU, columns as samples, and entries representing the abundance of each OTU as a ratio of all sequences obtained... -
Federal
Plant, soil, and microbial characteristics of marsh collapse in Mississippi River Deltaic wetlands
Department of the Interior —
Site, field, and soil data collected from 14 sites along a chronosequence of wetland submergence on 15 – 17 October 2019 in a Louisiana salt marsh in Barataria Basin,... -
Federal
Microbial Communities Across a Successional Gradient at Indiana Dunes National Park, 2015-2017
Department of the Interior —
This soil and vegetation data were collected along a successional gradient at the Indiana Dunes National Park. Soil samples were processed for standard soil... -
Federal
Eutrophication and plankton communities (Cyanobacteria and eukaryotic algae) in the Grand Calumet River Area of Concern, Indiana, 2021
Department of the Interior —
The data being released were part of a project funded by the United States Environmental Protection Agency (USEPA). This study sought to identify the planktonic... -
Federal
Cold-water coral microbiomes (Anthothela spp.) from Baltimore and Norfolk Canyons: raw and processed data
Department of the Interior —
The files included in this data release are the raw and processed deoxyribonucleic acid (DNA) sequence files referenced in the journal article by Lawler and others...
18 datasets found