Resilience of Microbial Communities Sequence Data Set
The EX_Genome_Assemblies.zip file contain the contig sequences (i.e. assembly) of fifteen isolates used for genomic and antibiotic resistance genes (ARG) analysis.
EX_OTU.fasta file contain the sequences of the bacterial 16S rRNA-encoding V4 region gene (≈250 nt) for each Operational Taxonomic Unit (OTU).
This dataset is associated with the following publication:
Gomez-Alvarez, V., S. Pfaller, J. Pressman, D. Wahman, and R. Revetta. Resilience of microbial communities in a simulated drinking water distribution system subjected to disturbances: role of conditionally rare taxa and potential implications for antibiotic-resistant bacteria. Environmental Science: Water Research & Technology. Royal Society of Chemistry, Cambridge, UK, 2: 645-657, (2016).
Resources
3 resources available
-
https://trace.ncbi.nlm.nih.gov/Traces/sra/?study=SRP069876
FILE -
EX_Genome_Assemblies.zip
APPLICATION/X-ZIP-COMPRESSED -
EX_OTU.fasta.zip
APPLICATION/X-ZIP-COMPRESSED
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Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[ "020:00" ] |
| contactPoint |
{ "fn": "Vicente Gomez-Alvarez", "hasEmail": "mailto:gomez-alvarez.vicente@epa.gov" } |
| description | The EX_Genome_Assemblies.zip file contain the contig sequences (i.e. assembly) of fifteen isolates used for genomic and antibiotic resistance genes (ARG) analysis. EX_OTU.fasta file contain the sequences of the bacterial 16S rRNA-encoding V4 region gene (≈250 nt) for each Operational Taxonomic Unit (OTU). This dataset is associated with the following publication: Gomez-Alvarez, V., S. Pfaller, J. Pressman, D. Wahman, and R. Revetta. Resilience of microbial communities in a simulated drinking water distribution system subjected to disturbances: role of conditionally rare taxa and potential implications for antibiotic-resistant bacteria. Environmental Science: Water Research & Technology. Royal Society of Chemistry, Cambridge, UK, 2: 645-657, (2016). |
| distribution |
[ { "title": "https://trace.ncbi.nlm.nih.gov/Traces/sra/?study=SRP069876", "accessURL": "https://trace.ncbi.nlm.nih.gov/Traces/sra/?study=SRP069876" }, { "title": "EX_Genome_Assemblies.zip", "mediaType": "application/x-zip-compressed", "downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1503390/EX_Genome_Assemblies.zip" }, { "title": "EX_OTU.fasta.zip", "mediaType": "application/x-zip-compressed", "downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1503390/EX_OTU.fasta.zip" } ] |
| identifier | https://doi.org/10.23719/1503390 |
| keyword |
[ "16S rRNA", "Antibiotic Resistance Genes", "Biofilm", "Genomes", "OTU", "drinking water", "microbial communities", "nitrification" ] |
| license | https://pasteur.epa.gov/license/sciencehub-license.html |
| modified | 2015-09-22 |
| programCode |
[ "020:096" ] |
| publisher |
{ "name": "U.S. EPA Office of Research and Development (ORD)", "subOrganizationOf": { "name": "U.S. Environmental Protection Agency", "subOrganizationOf": { "name": "U.S. Government" } } } |
| references |
[ "https://doi.org/10.1039/c6ew00053c" ] |
| rights |
null
|
| title | Resilience of Microbial Communities Sequence Data Set |
