Pilot-scale simulators and metagenomic to understand the storage tank ecosystem (JAWWA)
An abundance matrix (Table - 16S rRNA taxonomy.xlsx) contains rows as taxonomic lineage, columns as samples, and entries representing the abundance of each lineage as a number of reads and percentage of all reads obtained for each individual sample.
A table (Table - antibiotic resistance genes.xlsx) contains rows as antibiotic resistance genes (AMR), columns as AMR gene symbol, AMR gene name, AMR type, AMR subtype, AMR class, and AMR subclass at each tank.
A table (Table - metabolic pathways relative abundance.xlsx) contains rows as metabolic pathways, columns as samples, and entries representing the relative abundance of each pathway.
A table (Table - samples.xlsx) with description of storage tank and their locations.
Resources
4 resources available
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Table - 16S rRNA taxonomy.xlsx
APPLICATION/VND.OPENXMLFORMATS-OFFICEDOCUMENT.SPREADSHEETML.SHEET -
Table - antibiotic resistance genes.xlsx
APPLICATION/VND.OPENXMLFORMATS-OFFICEDOCUMENT.SPREADSHEETML.SHEET -
Table - metabolic pathways relative abundance.xlsx
APPLICATION/VND.OPENXMLFORMATS-OFFICEDOCUMENT.SPREADSHEETML.SHEET -
Table - samples.xlsx
APPLICATION/VND.OPENXMLFORMATS-OFFICEDOCUMENT.SPREADSHEETML.SHEET
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Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[ "020:00" ] |
| contactPoint |
{ "fn": "Vicente Gomez-Alvarez", "hasEmail": "mailto:gomez-alvarez.vicente@epa.gov" } |
| description | An abundance matrix (Table - 16S rRNA taxonomy.xlsx) contains rows as taxonomic lineage, columns as samples, and entries representing the abundance of each lineage as a number of reads and percentage of all reads obtained for each individual sample. A table (Table - antibiotic resistance genes.xlsx) contains rows as antibiotic resistance genes (AMR), columns as AMR gene symbol, AMR gene name, AMR type, AMR subtype, AMR class, and AMR subclass at each tank. A table (Table - metabolic pathways relative abundance.xlsx) contains rows as metabolic pathways, columns as samples, and entries representing the relative abundance of each pathway. A table (Table - samples.xlsx) with description of storage tank and their locations. |
| distribution |
[ { "title": "Table - 16S rRNA taxonomy.xlsx", "mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet", "downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1529128/Table%20-%2016S%20rRNA%20taxonomy.xlsx" }, { "title": "Table - antibiotic resistance genes.xlsx", "mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet", "downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1529128/Table%20-%20antibiotic%20resistance%20genes.xlsx" }, { "title": "Table - metabolic pathways relative abundance.xlsx", "mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet", "downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1529128/Table%20-%20metabolic%20pathways%20relative%20abundance.xlsx" }, { "title": "Table - samples.xlsx", "mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet", "downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1529128/Table%20-%20samples.xlsx" } ] |
| identifier | https://doi.org/10.23719/1529128 |
| keyword |
[ "drinking water distribution systems", "microbial communities", "storage tanks" ] |
| license | https://pasteur.epa.gov/license/sciencehub-license.html |
| modified | 2023-05-18 |
| programCode |
[ "020:000" ] |
| publisher |
{ "name": "U.S. EPA Office of Research and Development (ORD)", "subOrganizationOf": { "name": "U.S. Environmental Protection Agency", "subOrganizationOf": { "name": "U.S. Government" } } } |
| references |
null
|
| rights |
null
|
| title | Pilot-scale simulators and metagenomic to understand the storage tank ecosystem (JAWWA) |
