15 datasets found
-
Federal
Microbiota alter metabolism and mediate neurodevelopmental toxicity of 17beta-estradiol
U.S. Environmental Protection Agency —
Effects of developmental 17beta-estradiol exposure on microbiota and behavior in zebrafish. This dataset is associated with the following publication: Catron, T., A.... -
Federal
Measuring Microbial Community-Wide Antibiotic Resistance Propagation via Natural Transformation in the Human Gut Microbiome
National Institute of Standards and Technology —
This repository includes the raw data, analysis code, and results of a systematic analysis of natural transformation (i.e., horizontal gene transfer; HGT) of bacteria... -
Federal
Data for Weitekamp et al. "Triclosan-resistant host-associated microbiota perform xenobiotic biotransformations in larval zebrafish"
U.S. Environmental Protection Agency —
This file contains data used to generate figures shown in Weitekamp et al. Triclosan-resistant host-associated microbiota perform xenobiotic biotransformations in... -
Federal
Microbial Community Analysis based on 16S rRNA gene of Sediment Layers
U.S. Environmental Protection Agency —
A table (DP_OTU.xlsx) contains rows as OTUs, columns as samples, and entries representing the abundance of each OTU. This dataset is associated with the following... -
Federal
Data from: Pyrosequencing-Based Analysis of the Microbiome Associated with the Horn Fly, Haematobia irritans
Department of Agriculture —
The bacterial 16S tag-encoded FLX-titanium amplicon pyrosequencing (bTEFAP) method was used to carry out the classification analysis of bacterial flora in adult... -
Federal
Drinking Water Microbiome Taxonomic Lineage Abundance Data Set
U.S. Environmental Protection Agency —
An abundance matrix (BM_taxonomic_lineage.xlsx) contains rows as taxonomic lineage, columns as samples, and entries representing the abundance of each lineage as a... -
Federal
Functional Profile of Sediment Layers
U.S. Environmental Protection Agency —
A table (DP_KEGG.xlsx) contains rows as KEGG Orthology (KO), columns as sediment layers, and entries representing the abundance of each KO. This dataset is associated... -
Federal
Genes Encoding Key Enzymes for Nitrogen Metabolism in Sediment Layers
U.S. Environmental Protection Agency —
A table (DP_FAMA.xlsx) contains rows as nitrogen pathways genes, columns as sediment layers, and entries representing the abundance of each gene. This dataset is... -
Federal
Greywater Reuse - Microbial taxa
U.S. Environmental Protection Agency —
This provides taxonomic data (as relative abundances) derived from metagenomic sequencing of greywater samples. This dataset is associated with the following... -
Federal
CatronTara_A-brvd_MB2Dataset_20180221
U.S. Environmental Protection Agency —
This file contains data used to generate figures shown in Catron et al. Characterization of host toxicity and microbiota disruption in larval zebrafish following... -
Federal
Drinking Water Microbiome OTU Abundance Data Set
U.S. Environmental Protection Agency —
An abundance matrix (BM_OTU.xlsx) contains rows as OTU, columns as samples, and entries representing the abundance of each OTU as a ratio of all sequences obtained... -
Federal
Sequencing Data Set of Sediment Layers
U.S. Environmental Protection Agency —
A table (DP_SRA.xlsx) contains rows as sample and columns as entries representing the biosample accession number (NCBI), collection (date), library strategy, target... -
Federal
This file contains data used to generate figures shown in Phelps et al. Microbial colonization is required for normal neurobehavioral development in zebrafish. Scientific Reports. 2017.
U.S. Environmental Protection Agency —
Data used to generate figures shown in Phelps et al. This dataset is associated with the following publication: Phelps, D., N. Brinkman, S. Keely, E. Anneken, T.... -
Federal
Monoassociation with bacterial isolates reveals the role of colonization, community complexity and abundance on locomotor behavior in larval zebrafish
U.S. Environmental Protection Agency —
Across taxa, animals with depleted intestinal microbiomes show disrupted behavioral phenotypes. Axenic (i.e., microbe-free) mice, zebrafish, and fruit flies exhibit... -
Federal
Data from: Assessment of bacterial diversity in the cattle tick Rhipicephalus (Boophilus) microplus through tag-encoded pyrosequencing
Department of Agriculture —
The objective of this study was to explore the R. microplus microbiome by applying the bacterial 16S tag-encoded FLX-titanium amplicon pyrosequencing (bTEFAP)...
15 datasets found