15 datasets found
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Federal
Drinking Water Microbiome Sequence Data Set
U.S. Environmental Protection Agency —
The fasta file (BM_OTU.fasta) contain the sequences of the bacterial 16S rRNA-encoding V4 region gene (≈250 nt) for each Operational Taxonomic Unit (OTU). This... -
Federal
Microbiota alter metabolism and mediate neurodevelopmental toxicity of 17beta-estradiol
U.S. Environmental Protection Agency —
Effects of developmental 17beta-estradiol exposure on microbiota and behavior in zebrafish. This dataset is associated with the following publication: Catron, T., A.... -
Federal
Microbial Community Analysis based on 16S rRNA gene of Sediment Layers
U.S. Environmental Protection Agency —
A table (DP_OTU.xlsx) contains rows as OTUs, columns as samples, and entries representing the abundance of each OTU. This dataset is associated with the following... -
Federal
Functional Profile of Sediment Layers
U.S. Environmental Protection Agency —
A table (DP_KEGG.xlsx) contains rows as KEGG Orthology (KO), columns as sediment layers, and entries representing the abundance of each KO. This dataset is associated... -
Federal
Genes Encoding Key Enzymes for Nitrogen Metabolism in Sediment Layers
U.S. Environmental Protection Agency —
A table (DP_FAMA.xlsx) contains rows as nitrogen pathways genes, columns as sediment layers, and entries representing the abundance of each gene. This dataset is... -
Federal
Data for Weitekamp et al. "Triclosan-resistant host-associated microbiota perform xenobiotic biotransformations in larval zebrafish"
U.S. Environmental Protection Agency —
This file contains data used to generate figures shown in Weitekamp et al. Triclosan-resistant host-associated microbiota perform xenobiotic biotransformations in... -
Federal
Sequencing Data Set of Sediment Layers
U.S. Environmental Protection Agency —
A table (DP_SRA.xlsx) contains rows as sample and columns as entries representing the biosample accession number (NCBI), collection (date), library strategy, target... -
Federal
This file contains data used to generate figures shown in Phelps et al. Microbial colonization is required for normal neurobehavioral development in zebrafish. Scientific Reports. 2017.
U.S. Environmental Protection Agency —
Data used to generate figures shown in Phelps et al. This dataset is associated with the following publication: Phelps, D., N. Brinkman, S. Keely, E. Anneken, T.... -
Federal
Greywater Reuse - Microbial taxa
U.S. Environmental Protection Agency —
This provides taxonomic data (as relative abundances) derived from metagenomic sequencing of greywater samples. This dataset is associated with the following... -
Federal
Monoassociation with bacterial isolates reveals the role of colonization, community complexity and abundance on locomotor behavior in larval zebrafish
U.S. Environmental Protection Agency —
Across taxa, animals with depleted intestinal microbiomes show disrupted behavioral phenotypes. Axenic (i.e., microbe-free) mice, zebrafish, and fruit flies exhibit... -
Federal
Bioaccessibility of Arsenic from Contaminated Soils and Alteration of the Gut Microbiome in an In Vitro Gastrointestinal Model
U.S. Environmental Protection Agency —
Microbiome analyses. This dataset is associated with the following publication: Griggs, J., L. Chi, N. Hanley, M. Kohan, K. Herbin-Davis, D. Thomas, K. Lu, R. Fry,... -
Federal
16S and ITS amplicon sequencing of reconstructed wetland soil metagenomes
U.S. Environmental Protection Agency —
Experiments tested if changes in soil microbiomes within reconstructed freshwater wetlands were associated with exposure to elevated Cu concentrations originating... -
Federal
Drinking Water Microbiome Taxonomic Lineage Abundance Data Set
U.S. Environmental Protection Agency —
An abundance matrix (BM_taxonomic_lineage.xlsx) contains rows as taxonomic lineage, columns as samples, and entries representing the abundance of each lineage as a... -
Federal
CatronTara_A-brvd_MB2Dataset_20180221
U.S. Environmental Protection Agency —
This file contains data used to generate figures shown in Catron et al. Characterization of host toxicity and microbiota disruption in larval zebrafish following... -
Federal
Drinking Water Microbiome OTU Abundance Data Set
U.S. Environmental Protection Agency —
An abundance matrix (BM_OTU.xlsx) contains rows as OTU, columns as samples, and entries representing the abundance of each OTU as a ratio of all sequences obtained...
15 datasets found