Search datasets
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[NOTE 2026-06-30: Data file "foliar_eco-evo_analysis_v2.R" added in place of "foliar_eco-evo_analysis.R"]These microbiome data and analyses are part of a DNA amplicon sequencing project performed...
Search relevance: 1.00 | Views last month: 7 | Catalog Last Checked: August 03, 2026 at 05:01 PM -
A table (DP_OTU.xlsx) contains rows as OTUs, columns as samples, and entries representing the abundance of each OTU. This dataset is associated with the following publication: Gomez-Alvarez, V.,...
Search relevance: 1.00 | Views last month: 7 | Catalog Last Checked: August 03, 2026 at 12:47 AM -
The bacterial 16S tag-encoded FLX-titanium amplicon pyrosequencing (bTEFAP) method was used to carry out the classification analysis of bacterial flora in adult female and male horn flies and horn...
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A table (DP_SRA.xlsx) contains rows as sample and columns as entries representing the biosample accession number (NCBI), collection (date), library strategy, target (source), and sequencing...
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The fasta file (BM_OTU.fasta) contain the sequences of the bacterial 16S rRNA-encoding V4 region gene (≈250 nt) for each Operational Taxonomic Unit (OTU). This dataset is associated with the...
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Sustainable culture of sablefish (Anoplopoma fimbria) is an active research area at NWFSC, with a primary objective of rearing a human food source under healthy, economic, and sustainable...
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This repository includes the raw data, analysis code, and results of a systematic analysis of natural transformation (i.e., horizontal gene transfer; HGT) of bacteria in a naturally occurring...
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Mediterranean fruit fly males reared for sterile insect technique (SIT) have been shown to have differences in their microbiomes relative to other population sources, which has been postulated to...
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Experiments tested if changes in soil microbiomes within reconstructed freshwater wetlands were associated with exposure to elevated Cu concentrations originating from immersed Micronized Copper...
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This repository contains raw and intermediate data files as well as analysis code from the manuscript "Evaluating the Analytical Performance of Direct-to-Consumer Gut Microbiome Testing Services"....
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Study aim was to determine establishment success of antibiotic resistance bacteria in laboratory and mass-reared Mediterranean fruit fly (Ceratitis capitata). Experiments conducted in Hilo, HI,...
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This file contains data used to generate figures shown in Weitekamp et al. Triclosan-resistant host-associated microbiota perform xenobiotic biotransformations in larval zebrafish. This dataset...
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The present study analyzed the microbial communities of a constructed wetlands designed to treat reverse osmosis concentrate generated by an advanced water treatment facility. DNA sequencing and...
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This file contains data used to generate figures shown in Catron et al. Characterization of host toxicity and microbiota disruption in larval zebrafish following developmental exposure to BPA and...
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Species- and sex-related differences of four laboratory tephritid fruit fly (Diptera: Tephritidae) gut microbiomes evaluated with full-length 16S rRNA PacBio Kinnex sequencing. Insect gut...
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This data release includes the 16S whole-organism sequencing data for larval aquatic insects, emergent adult insects, and two riparian spiders from upstream and downstream sites of a PFAS (per-...
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North American bats have experienced catastrophic population declines from white-nose syndrome (WNS), a fungal disease caused by Pseudogymnoascus destructans (Pd). Although Pd can infect many...
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A table (DP_KEGG.xlsx) contains rows as KEGG Orthology (KO), columns as sediment layers, and entries representing the abundance of each KO. This dataset is associated with the following...
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Data include microbial count data (CFUs), 16S-rRNA copy number data (qPCR), and microbial community (microbiome) data from the guts of the invasive tephritid fruit flies, melon fly (Zeugodacus...
Search relevance: 1.00 | Views last month: 1 | Catalog Last Checked: August 01, 2026 at 04:51 AM -
A table (DP_FAMA.xlsx) contains rows as nitrogen pathways genes, columns as sediment layers, and entries representing the abundance of each gene. This dataset is associated with the following...
Search relevance: 1.00 | Views last month: 1 | Catalog Last Checked: August 03, 2026 at 12:47 AM
