Search datasets
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The bacterial 16S tag-encoded FLX-titanium amplicon pyrosequencing (bTEFAP) method was used to carry out the classification analysis of bacterial flora in adult female and male horn flies and horn...
Search relevance: 1.00 | Views last month: 22 | Catalog Last Checked: October 09, 2026 at 04:37 PM -
The present study analyzed the microbial communities of a constructed wetlands designed to treat reverse osmosis concentrate generated by an advanced water treatment facility. DNA sequencing and...
Search relevance: 1.00 | Views last month: 8 | Catalog Last Checked: September 10, 2026 at 07:43 PM -
In US catfish aquaculture, copper sulfate pentahydrate (CSP; CuSO4·5H2O) is used for a wide variety of applications including the control of blue-green algae, pathogenic bacteria, and parasite...
Search relevance: 1.00 | Views last month: 8 | Catalog Last Checked: October 09, 2026 at 04:38 PM -
This repository contains raw and intermediate data files as well as analysis code from the manuscript "Evaluating the Analytical Performance of Direct-to-Consumer Gut Microbiome Testing Services"....
Search relevance: 1.00 | Views last month: 4 | Catalog Last Checked: September 10, 2026 at 05:53 PM -
Data include microbial count data (CFUs), 16S-rRNA copy number data (qPCR), and microbial community (microbiome) data from the guts of the invasive tephritid fruit flies, melon fly (Zeugodacus...
Search relevance: 1.00 | Views last month: 4 | Catalog Last Checked: October 09, 2026 at 04:34 PM -
The fasta file (BM_OTU.fasta) contain the sequences of the bacterial 16S rRNA-encoding V4 region gene (≈250 nt) for each Operational Taxonomic Unit (OTU). This dataset is associated with the...
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Species- and sex-related differences of four laboratory tephritid fruit fly (Diptera: Tephritidae) gut microbiomes evaluated with full-length 16S rRNA PacBio Kinnex sequencing. Insect gut...
Search relevance: 1.00 | Views last month: 3 | Catalog Last Checked: October 09, 2026 at 04:33 PM -
Sustainable culture of sablefish (Anoplopoma fimbria) is an active research area at NWFSC, with a primary objective of rearing a human food source under healthy, economic, and sustainable...
Search relevance: 1.00 | Views last month: 3 | Catalog Last Checked: August 03, 2026 at 04:03 AM -
The bacterial 16S rRNA gene is used extensively for the study of host and environment microbiomes. These approaches have most often relied on sequencing partial fragments of the 16S (250-400bp)....
Search relevance: 1.00 | Views last month: 3 | Catalog Last Checked: October 09, 2026 at 04:33 PM -
Experiments tested if changes in soil microbiomes within reconstructed freshwater wetlands were associated with exposure to elevated Cu concentrations originating from immersed Micronized Copper...
Search relevance: 1.00 | Views last month: 3 | Catalog Last Checked: September 10, 2026 at 06:58 PM -
A table (DP_KEGG.xlsx) contains rows as KEGG Orthology (KO), columns as sediment layers, and entries representing the abundance of each KO. This dataset is associated with the following...
Search relevance: 1.00 | Views last month: 2 | Catalog Last Checked: September 10, 2026 at 06:57 PM -
Effects of developmental 17beta-estradiol exposure on microbiota and behavior in zebrafish. This dataset is associated with the following publication: Catron, T., A. Swank, L. Wehmas, D. Phelps,...
Search relevance: 1.00 | Views last month: 2 | Catalog Last Checked: September 10, 2026 at 06:55 PM -
Data used to generate figures shown in Phelps et al. This dataset is associated with the following publication: Phelps, D., N. Brinkman, S. Keely, E. Anneken, T. Catron, D. Betancourt, C. Wood,...
Search relevance: 1.00 | Views last month: 2 | Catalog Last Checked: September 10, 2026 at 06:53 PM -
A table (DP_OTU.xlsx) contains rows as OTUs, columns as samples, and entries representing the abundance of each OTU. This dataset is associated with the following publication: Gomez-Alvarez, V.,...
Search relevance: 1.00 | Views last month: 2 | Catalog Last Checked: September 10, 2026 at 06:57 PM -
Microbiome analyses. This dataset is associated with the following publication: Griggs, J., L. Chi, N. Hanley, M. Kohan, K. Herbin-Davis, D. Thomas, K. Lu, R. Fry, and K. Bradham....
Search relevance: 1.00 | Views last month: 2 | Catalog Last Checked: September 10, 2026 at 06:59 PM -
This provides taxonomic data (as relative abundances) derived from metagenomic sequencing of greywater samples. This dataset is associated with the following publication: Nagarkar, M., S. Keely,...
Search relevance: 1.00 | Views last month: 2 | Catalog Last Checked: September 10, 2026 at 06:58 PM -
The objective of this study was to explore the R. microplus microbiome by applying the bacterial 16S tag-encoded FLX-titanium amplicon pyrosequencing (bTEFAP) technique to characterize its...
Search relevance: 1.00 | Views last month: 2 | Catalog Last Checked: October 09, 2026 at 04:34 PM -
This data release includes sampling location data, the information about sequenced organisms and the SRA accession number for the 16S whole-organism sequencing data for larval aquatic insects,...
Search relevance: 1.00 | Views last month: 2 | Catalog Last Checked: September 10, 2026 at 08:07 PM -
We conducted a fly rearing experiment to characterize diet-induced changes in the microbiome of female Bactrocera dorsalis. In order to explicitly investigate the impacts of larval diet on the...
Search relevance: 1.00 | Views last month: 2 | Catalog Last Checked: October 09, 2026 at 04:33 PM -
A table (DP_SRA.xlsx) contains rows as sample and columns as entries representing the biosample accession number (NCBI), collection (date), library strategy, target (source), and sequencing...
Search relevance: 1.00 | Views last month: 2 | Catalog Last Checked: September 10, 2026 at 06:57 PM
