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    • Data from: Genomic features of the host-specific fungal biocontrol agent Ramularia crupinae approved for the management of the federally noxious weed Crupina vulgaris

    Metadata Updated: April 21, 2025

    Ramularia crupinae is a foliar and stem blighting fungal pathogen specific to the invasive rangeland weed common crupina (Crupina vulgaris). This fungal plant pathogen was recently approved by the Animal and Plant Health Inspection Service (APHIS) as the first biological control agent for the management of common crupina in the western United States. The genome assembly for R. crupinae 00-010 (https://mycocosm.jgi.doe.gov/Ramcr1/Ramcr1.info.html) contains 18 contigs totaling 37.9 Mb, and was annotated using the JGI fungal annotation pipeline. The information contained within this Ag Data Commons dataset provides an updated R. crupinae chromosome-level genome assembly. These data are freely available for research purposes. Resources in this dataset:

    Resource Title: Ramularia crupinae chromosome-level assembly File Name: Ramularia crupinae_14chrm.zip Resource Description: The R. crupinae genome was re-assembled to improve the contiguity of putative chromosome length scaffolds and attempt chromosome-level assembly. This improved assembly was 37,889,040 bp in size with 15 fragments (N50: 2,786,127 bp) and 810x coverage.

    Access & Use Information

    Public: This dataset is intended for public access and use. License: us-pd

    Downloads & Resources

    Dates

    Metadata Created Date March 30, 2024
    Metadata Updated Date April 21, 2025

    Metadata Source

    Harvested from USDA JSON

    Other Data Resources

    Additional Metadata

    Resource Type Dataset
    Metadata Created Date March 30, 2024
    Metadata Updated Date April 21, 2025
    Publisher Agricultural Research Service
    Maintainer
    Identifier 10.15482/USDA.ADC/1529785
    Data Last Modified 2023-12-18
    Public Access Level public
    Bureau Code 005:18
    Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
    Schema Version https://project-open-data.cio.gov/v1.1/schema
    Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
    Harvest Object Id 4dedb08d-a173-48ca-a7d1-c35fb9b996e6
    Harvest Source Id d3fafa34-0cb9-48f1-ab1d-5b5fdc783806
    Harvest Source Title USDA JSON
    License https://www.usa.gov/publicdomain/label/1.0/
    Old Spatial {"type": "Point", "coordinates": -77.428025007248, 39.44359220831}
    Program Code 005:040
    Source Datajson Identifier True
    Source Hash 3c172461aa9df947427e4316ffc031fa97a42fe2590629a1f2cec779394064cd
    Source Schema Version 1.1
    Spatial {"type": "Point", "coordinates": -77.428025007248, 39.44359220831}
    Temporal 2023-10-06/2023-10-06

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