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Data from: Dataset of de novo assembly and functional annotation of the transcriptome of blueberry (Vaccinium spp.)

Metadata Updated: March 30, 2024

Blueberry is an economically important berry crop. Both production and consumption of blueberries have increased sharply worldwide in recent years at least partly due to their known health benefits. The development of improved genomic resources for blueberry, such as a well-assembled genome and transcriptome, could accelerate breeding through genomic-assisted approaches. To enrich available transcriptome data and identify genes potentially involved in fruit quality, RNA sequencing was performed on fruit tissue from two northern-adapted hybrid blueberry breeding populations. RNA-seq was carried out using the Illumina HiSeqTM 2500 platform. Because of the absence of a reference-grade genome for blueberry, a transcriptome was de novo assembled from this RNA-seq data and other publicly available transcriptome data from blueberry downloaded from the National Center for Biotechnology Information (NCBI) Short Read Archive (SRA) using Trinity. After removing redundancy, this resulted in a dataset of 91,861 blueberry unigenes. This unigene dataset was functionally annotated using the NCBI-Nr protein database. All raw reads from the breeding populations were deposited in the NCBI SRA with accession numbers SRR6281886, SRR6281887, SRR6281888, and SRR6281889. The de novo transcriptome assembly was deposited at NCBI Transcriptome Shotgun Assembly (TSA) database with accession number GGAB00000000. These data will provide real expression evidence for the blueberry genome gene prediction and gene functional annotation and a reference transcriptome for future gene expression studies involving blueberry fruit. Resources in this dataset:Resource Title: Dataset of de novo assembly and functional annotation of the transcriptome of blueberry (Vaccinium spp.). File Name: Web Page, url: https://doi.org/10.1016/j.dib.2019.104390

Access & Use Information

Public: This dataset is intended for public access and use. License: Creative Commons Attribution

Downloads & Resources

Dates

Metadata Created Date March 30, 2024
Metadata Updated Date March 30, 2024

Metadata Source

Harvested from USDA JSON

Additional Metadata

Resource Type Dataset
Metadata Created Date March 30, 2024
Metadata Updated Date March 30, 2024
Publisher Agricultural Research Service
Maintainer
Identifier 10.1016/j.dib.2019.104390
Data Last Modified 2023-12-18
Public Access Level public
Bureau Code 005:18
Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
Schema Version https://project-open-data.cio.gov/v1.1/schema
Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
Harvest Object Id 6d0f1ca3-0b9c-45a9-978d-dd91acc5ba7d
Harvest Source Id d3fafa34-0cb9-48f1-ab1d-5b5fdc783806
Harvest Source Title USDA JSON
License https://creativecommons.org/licenses/by/4.0/
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Program Code 005:040
Source Datajson Identifier True
Source Hash 150a44f8469c741fb81e60863bc34839d805831e5ce65cece7b8ae4b93ab27b9
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