Data from: BBGD: an online database for blueberry genomic data

Metadata Updated: March 30, 2024

This dataset is supplemental to the article "BBGD: an online database for blueberry genomic data," (2007); it is titled "list of genes printed on microarray slides." The article, "BBGD: an online database for blueberry genomic data," (2007) involving blueberry cold hardiness experiments has a list of all the genes that were printed on microarray slides. This dataset, supplemental to the article, is called: "list of genes printed on microarray slides." 1471-2229-7-5-s1.xls 663k. By using the BBGD database, researchers developed EST-based markers for mapping, and have identified a number of "candidate" cold tolerance genes that are highly expressed in blueberry flower buds after exposure to low temperatures.

BBGD (http://bioinformatics.towson.edu/BBGD/) is a public online database, and was developed for blueberry genomics. BBGD is both a sequence and gene expression database: it stores both EST and microarray data, and allows scientists to correlate expression profiles with gene function. Presently, the main focus of the database is the identification of genes in blueberry that are significantly induced or suppressed after low temperature exposure. Data was collected sometime between 2000 and 2007 - exact dates are unknown. Resources in this dataset:Resource Title: List of genes printed on microarray slides, 1471-2229-7-5-s1.xls. File Name: 1471-2229-7-5-s1.xlsResource Title: Data dictionary. File Name: BBGD-data-dictionary.csvResource Description: Defines fields for list of genes.

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Public: This dataset is intended for public access and use. License: Creative Commons Attribution

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Dates

Metadata Created Date	March 30, 2024
Metadata Updated Date	March 30, 2024

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Data.json Data.json Metadata
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Harvested from USDA JSON

Additional Metadata

Resource Type	Dataset
Metadata Created Date	March 30, 2024
Metadata Updated Date	March 30, 2024
Publisher	Agricultural Research Service
Maintainer	Alkharouf, Nadim W.
Identifier	10.15482/USDA.ADC/1173243
Data Last Modified	2023-11-30
Public Access Level	public
Bureau Code	005:18
Metadata Context	https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
Schema Version	https://project-open-data.cio.gov/v1.1/schema
Catalog Describedby	https://project-open-data.cio.gov/v1.1/schema/catalog.json
Harvest Object Id	d5a50512-7b8d-4e45-94fb-44459c6584fa
Harvest Source Id	d3fafa34-0cb9-48f1-ab1d-5b5fdc783806
Harvest Source Title	USDA JSON
License	https://creativecommons.org/licenses/by/4.0/
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