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Breedbase

Metadata Updated: April 21, 2025

Breedbase is a web-based, comprehensive breeding management and analysis software. It can be used to design field layouts, collect phenotypic information using tablets, support the collection of genotyping samples in a field, store large amounts of high density genotypic information, and provide Genomic Selection related analyses and predictions. Breedbase supports the Breeding Application Programming Interface (BrAPI) standard which defines data objects and methods for exchanging breeding data. The Breedbase system has evolved from the Sol Genomics Network (SGN) and Cassavabase and related sites (see RTBbase.org). There are a number of instances running for diverse crops, including Cassava (https://cassavabase.org, sweet potato (https://sweetpotatobase.org), banana (https://musabase.org), rice (https://ricebase.org), tomato and other Solanaceae (https://solgenomics.net/) and many others. The Breedbase manual provides detailed information about available features. Resources in this dataset:Resource Title: Website Pointer for Breedbase. File Name: Web Page, url: https://breedbase.org/ Search utilities: Wizard; Accessions and Plots; Organisms; Progenies and Crosses; Field Trials; Genotyping Plates; Genotyping Data Projects; Genotyping Protocols; Traits; Images; People; FAQ. Manage utilities: User Roles; Breeding Programs; Locations; Accessions; Seed Lots; Crosses; Field Trials; Genotyping Trials; Field Book App; Phenotyping; Barcodes; Label Designer; Download; Upload; ODK Data Collection. Analyze utilities: Breeder Tools -- Selection Index; Genomic Selection; Population Structure; Accession Usage; Compare Trials; Graphical Filtering Sequence Analysis -- BLAST; VIGS Tool; HapMap Jbrowse Other -- Ontology Browser; Compose a New Trait.

Access & Use Information

Public: This dataset is intended for public access and use. License: Creative Commons Attribution

Downloads & Resources

Dates

Metadata Created Date March 30, 2024
Metadata Updated Date April 21, 2025

Metadata Source

Harvested from USDA JSON

Additional Metadata

Resource Type Dataset
Metadata Created Date March 30, 2024
Metadata Updated Date April 21, 2025
Publisher Agricultural Research Service
Maintainer
Identifier 10113/AA23234
Data Last Modified 2023-12-18
Public Access Level public
Bureau Code 005:18
Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
Schema Version https://project-open-data.cio.gov/v1.1/schema
Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
Harvest Object Id 45cac8ab-7863-4eb0-bb3f-9e09f15487a4
Harvest Source Id d3fafa34-0cb9-48f1-ab1d-5b5fdc783806
Harvest Source Title USDA JSON
License https://creativecommons.org/licenses/by/4.0/
Old Spatial {"type": "Polygon", "coordinates": -532.96875, -83.520162383532, -532.96875, 85.17097012841, -164.53125, 85.17097012841, -164.53125, -83.520162383532, -532.96875, -83.520162383532}
Program Code 005:040
Source Datajson Identifier True
Source Hash 5504565050bc60783c38efff4262b765fd46679a201feda1bcfccb566366bc9b
Source Schema Version 1.1
Spatial {"type": "Polygon", "coordinates": -532.96875, -83.520162383532, -532.96875, 85.17097012841, -164.53125, 85.17097012841, -164.53125, -83.520162383532, -532.96875, -83.520162383532}
Temporal 2005-01-01/2005-01-01

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