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    • Breedbase

    Metadata Updated: December 2, 2025

    Breedbase is a web-based, comprehensive breeding management and analysis software. It can be used to design field layouts, collect phenotypic information using tablets, support the collection of genotyping samples in a field, store large amounts of high density genotypic information, and provide Genomic Selection related analyses and predictions. Breedbase supports the Breeding Application Programming Interface (BrAPI) standard which defines data objects and methods for exchanging breeding data. The Breedbase system has evolved from the Sol Genomics Network (SGN) and Cassavabase and related sites (see RTBbase.org). There are a number of instances running for diverse crops, including Cassava (https://cassavabase.org, sweet potato (https://sweetpotatobase.org), banana (https://musabase.org), rice (https://ricebase.org), tomato and other Solanaceae (https://solgenomics.net/) and many others. The Breedbase manual provides detailed information about available features.


    Resources in this dataset:


    • Resource Title: Website Pointer for Breedbase.

      File Name: Web Page, url: https://breedbase.org/

      Search utilities: Wizard; Accessions and Plots; Organisms; Progenies and Crosses; Field Trials; Genotyping Plates; Genotyping Data Projects; Genotyping Protocols; Traits; Images; People; FAQ.

      Manage utilities: User Roles; Breeding Programs; Locations; Accessions; Seed Lots; Crosses; Field Trials; Genotyping Trials; Field Book App; Phenotyping; Barcodes; Label Designer; Download; Upload; ODK Data Collection.

      Analyze utilities: Breeder Tools -- Selection Index; Genomic Selection; Population Structure; Accession Usage; Compare Trials; Graphical Filtering Sequence Analysis -- BLAST; VIGS Tool; HapMap Jbrowse Other -- Ontology Browser; Compose a New Trait.

    Access & Use Information

    Public: This dataset is intended for public access and use. License: Creative Commons Attribution

    Downloads & Resources

    Dates

    Metadata Created Date March 30, 2024
    Metadata Updated Date December 2, 2025

    Metadata Source

    Harvested from USDA JSON

    Other Data Resources

    Additional Metadata

    Resource Type Dataset
    Metadata Created Date March 30, 2024
    Metadata Updated Date December 2, 2025
    Publisher Agricultural Research Service
    Maintainer
    Identifier 10113/AA23234
    Data Last Modified 2025-11-21
    Public Access Level public
    Bureau Code 005:18
    Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
    Schema Version https://project-open-data.cio.gov/v1.1/schema
    Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
    Harvest Object Id 0f3785b7-cc0f-44dc-8b4f-f12a474d4f10
    Harvest Source Id d3fafa34-0cb9-48f1-ab1d-5b5fdc783806
    Harvest Source Title USDA JSON
    License https://creativecommons.org/licenses/by/4.0/
    Old Spatial {"type": "Polygon", "coordinates": -532.96875, -83.520162383532, -532.96875, 85.17097012841, -164.53125, 85.17097012841, -164.53125, -83.520162383532, -532.96875, -83.520162383532}
    Program Code 005:040
    Source Datajson Identifier True
    Source Hash a57c01174ee707ea15bc97f66c50b1566cd8a40d7b17a68231eb40759d82b3d1
    Source Schema Version 1.1
    Spatial {"type": "Polygon", "coordinates": -532.96875, -83.520162383532, -532.96875, 85.17097012841, -164.53125, 85.17097012841, -164.53125, -83.520162383532, -532.96875, -83.520162383532}
    Temporal 2005-01-01/2005-01-01

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