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Angus Sequence Data: Animal 44542

Metadata Updated: March 30, 2024

Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format. The National Animal Germplasm Program has germplasm for this animal, with the repository number 44542. There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the Collection Dataset. In the diagram, the two reads would correspond to read 1 and read 3. Resources in this dataset:Resource Title: Animal 44542 Sequence Data - SCINet . File Name: Web Page, url: https://app.globus.org/file-manager?destination_id=e5391440-1d5e-11ec-a0a0-6b21ca6daf73&destination_path=/node32135/ tar file containing 14 files. The files are: RAPiD-Genomics_F112_CSU_136201_P001_WB12_i5-515_i7-120_S24_L003_R1_001.fastq.gz RAPiD-Genomics_F112_CSU_136201_P001_WB12_i5-515_i7-120_S24_L003_R2_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WB12-i5-515-i7-120_S160_L002_R1_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WB12-i5-515-i7-120_S160_L002_R2_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WB12-i5-515-i7-120_S24_L001_R1_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WB12-i5-515-i7-120_S24_L001_R2_001.fastq.gz RAPiD-Genomics-F114-CSU-136201-P001-WB12-i5-515-i7-120_S24_L003_R1_001.fastq.gz RAPiD-Genomics-F114-CSU-136201-P001-WB12-i5-515-i7-120_S24_L003_R2_001.fastq.gz RAPiD-Genomics_F115_CSU_136201_P001_WB12_i5-515_i7-120_S24_L001_R1_001.fastq.gz RAPiD-Genomics_F115_CSU_136201_P001_WB12_i5-515_i7-120_S24_L001_R2_001.fastq.gz RAPiD-Genomics_F115_CSU_136201_P001_WB12_i5-515_i7-120_S24_L002_R1_001.fastq.gz RAPiD-Genomics_F115_CSU_136201_P001_WB12_i5-515_i7-120_S24_L002_R2_001.fastq.gz RAPiD-Genomics_F116_CSU_136201_P001_WB12_i5-515_i7-120_S379_L002_R1_001.fastq.gz RAPiD-Genomics_F116_CSU_136201_P001_WB12_i5-515_i7-120_S379_L002_R2_001.fastq.gz The .tar file can be accessed/retrieved with valid SCINet account at this location: /KEEP/ADCdatastorage/NAL/published/node32135/44542.tar See the SCINet File Transfer guide for more information on moving large files: https://scinet.usda.gov/guides/data/datatransfer Globus users: The files can also be accessed through Globus by following this data link.The user will need to log in to Globus in order to retrieve this data. User accounts are free of charge with several options for signing on. Instructions for creating an account are on the login page.

Access & Use Information

Public: This dataset is intended for public access and use. License: us-pd

Downloads & Resources

Dates

Metadata Created Date March 30, 2024
Metadata Updated Date March 30, 2024

Metadata Source

Harvested from USDA JSON

Additional Metadata

Resource Type Dataset
Metadata Created Date March 30, 2024
Metadata Updated Date March 30, 2024
Publisher Agricultural Research Service
Maintainer
Identifier 10.15482/USDA.ADC/1529255
Data Last Modified 2023-11-30
Public Access Level public
Bureau Code 005:18
Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
Schema Version https://project-open-data.cio.gov/v1.1/schema
Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
Harvest Object Id 6fb45db3-2253-4828-80e4-70bfac43bb15
Harvest Source Id d3fafa34-0cb9-48f1-ab1d-5b5fdc783806
Harvest Source Title USDA JSON
License https://www.usa.gov/publicdomain/label/1.0/
Old Spatial {"type": "Point", "coordinates": -106.56610600168, 41.222307724193}
Program Code 005:040
Source Datajson Identifier True
Source Hash 99ef4172058c3419812855f16d8d999d462f820000e827638d3dea750d7ab6c7
Source Schema Version 1.1
Spatial {"type": "Point", "coordinates": -106.56610600168, 41.222307724193}

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