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Angus Sequence Data: Animal 29451

Metadata Updated: November 2, 2024

Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.The National Animal Germplasm Program has germplasm for this animal, with the repository number 29451.There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the Collection Dataset. In the diagram, the two reads would correspond to read 1 and read 3.Resources in this dataset:Resource Title: Animal 29451 Sequence Data - SCINet. File Name: Web Page, url: https://app.globus.org/file-manager?origin_id=904c2108-90cf-11e8-9672-0a6d4e044368&origin_path=/LTS/ADCdatastorage/NAL/published/node32131/tar file containing 14 files. The files are: RAPiD-Genomics_F112_CSU_136201_P001_WB10_i5-515_i7-118_S22_L003_R1_001.fastq.gz RAPiD-Genomics_F112_CSU_136201_P001_WB10_i5-515_i7-118_S22_L003_R2_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WB10-i5-515-i7-118_S158_L002_R1_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WB10-i5-515-i7-118_S158_L002_R2_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WB10-i5-515-i7-118_S22_L001_R1_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WB10-i5-515-i7-118_S22_L001_R2_001.fastq.gz RAPiD-Genomics-F114-CSU-136201-P001-WB10-i5-515-i7-118_S22_L003_R1_001.fastq.gz RAPiD-Genomics-F114-CSU-136201-P001-WB10-i5-515-i7-118_S22_L003_R2_001.fastq.gz RAPiD-Genomics_F115_CSU_136201_P001_WB10_i5-515_i7-118_S22_L001_R1_001.fastq.gz RAPiD-Genomics_F115_CSU_136201_P001_WB10_i5-515_i7-118_S22_L001_R2_001.fastq.gz RAPiD-Genomics_F115_CSU_136201_P001_WB10_i5-515_i7-118_S22_L002_R1_001.fastq.gz RAPiD-Genomics_F115_CSU_136201_P001_WB10_i5-515_i7-118_S22_L002_R2_001.fastq.gz RAPiD-Genomics_F116_CSU_136201_P001_WB10_i5-515_i7-118_S377_L002_R1_001.fastq.gz RAPiD-Genomics_F116_CSU_136201_P001_WB10_i5-515_i7-118_S377_L002_R2_001.fastq.gzSCINet users: The .tar file can be accessed/retrieved with valid SCINet account at this location: /LTS/ADCdatastorage/NAL/published/node32131/See the SCINet File Transfer guide for more information on moving large files: https://scinet.usda.gov/guides/data/datatransferGlobus users: The files can also be accessed through Globus by following this data link. The user will need to log in to Globus in order to retrieve this data. User accounts are free of charge with several options for signing on. Instructions for creating an account are on the login page.

Access & Use Information

Public: This dataset is intended for public access and use. License: us-pd

Downloads & Resources

Dates

Metadata Created Date March 30, 2024
Metadata Updated Date November 2, 2024

Metadata Source

Harvested from USDA JSON

Additional Metadata

Resource Type Dataset
Metadata Created Date March 30, 2024
Metadata Updated Date November 2, 2024
Publisher Agricultural Research Service
Maintainer
Identifier 10.15482/USDA.ADC/1529257
Data Last Modified 2024-10-21
Public Access Level public
Bureau Code 005:18
Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
Schema Version https://project-open-data.cio.gov/v1.1/schema
Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
Harvest Object Id 2a0b6709-6922-4ee1-8c51-6f9c15a3653b
Harvest Source Id d3fafa34-0cb9-48f1-ab1d-5b5fdc783806
Harvest Source Title USDA JSON
License https://www.usa.gov/publicdomain/label/1.0/
Old Spatial {"type": "Point", "coordinates": -106.56610600168, 41.222307724193}
Program Code 005:040
Source Datajson Identifier True
Source Hash 31f573523297fd1de85d072837e1b7a165ad10d2881f92c1689b3f6979ead92e
Source Schema Version 1.1
Spatial {"type": "Point", "coordinates": -106.56610600168, 41.222307724193}

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