Angus Sequence Data: Animal 20587

Metadata Updated: November 2, 2024

Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.The National Animal Germplasm Program has germplasm for this animal, with the repository number 20587.There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the Collection Dataset. In the diagram, the two reads would correspond to read 1 and read 3.Resources in this dataset:Resource Title: Animal 20587 Sequence Data - SCINet .File Name: Web Page, url: https://app.globus.org/file-manager?origin_id=904c2108-90cf-11e8-9672-0a6d4e044368&origin_path=/LTS/ADCdatastorage/NAL/published/node32043/.tar file containing 14 files. The files are: RAPiD-Genomics_F112_CSU_136201_P001_WA10_i5-515_i7-106_S10_L003_R1_001.fastq.gzRAPiD-Genomics-F114-CSU-136201-P001-WA10-i5-515-i7-106_S10_L003_R2_001.fastq.gz RAPiD-Genomics_F112_CSU_136201_P001_WA10_i5-515_i7-106_S10_L003_R2_001.fastq.gzRAPiD-Genomics_F115_CSU_136201_P001_WA10_i5-515_i7-106_S10_L001_R1_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WA10-i5-515-i7-106_S10_L001_R1_001.fastq.gzRAPiD-Genomics_F115_CSU_136201_P001_WA10_i5-515_i7-106_S10_L001_R2_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WA10-i5-515-i7-106_S10_L001_R2_001.fastq.gzRAPiD-Genomics_F115_CSU_136201_P001_WA10_i5-515_i7-106_S10_L002_R1_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WA10-i5-515-i7-106_S146_L002_R1_001.fastq.gzRAPiD-Genomics_F115_CSU_136201_P001_WA10_i5-515_i7-106_S10_L002_R2_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WA10-i5-515-i7-106_S146_L002_R2_001.fastq.gzRAPiD-Genomics_F116_CSU_136201_P001_WA10_i5-515_i7-106_S365_L002_R1_001.fastq.gz RAPiD-Genomics-F114-CSU-136201-P001-WA10-i5-515-i7-106_S10_L003_R1_001.fastq.gzRAPiD-Genomics_F116_CSU_136201_P001_WA10_i5-515_i7-106_S365_L002_R2_001.fastq.gzThe .tar file can be accessed/retrieved with valid SCINet account at this location: /LTS/ADCdatastorage/NAL/published/node32043/SCINet users: See the SCINet File Transfer guide for more information on moving large files: https://scinet.usda.gov/guides/data/datatransferGlobus users: The files can also be accessed through Globus by following this data link. The user will need to log in to Globus in order to retrieve this data. User accounts are free of charge with several options for signing on. Instructions for creating an account are on the login page.

Access & Use Information

Public: This dataset is intended for public access and use. License: us-pd

Downloads & Resources

https://app.globus.org/file-manager?origin_id=9...HTML

Visit page

Dates

Metadata Created Date	March 30, 2024
Metadata Updated Date	November 2, 2024

Metadata Source

Data.json Data.json Metadata
Download Metadata

Harvested from USDA JSON

Additional Metadata

Resource Type	Dataset
Metadata Created Date	March 30, 2024
Metadata Updated Date	November 2, 2024
Publisher	Agricultural Research Service
Maintainer	Blackburn, Harvey
Identifier	10.15482/USDA.ADC/1529240
Data Last Modified	2024-10-18
Public Access Level	public
Bureau Code	005:18
Metadata Context	https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
Schema Version	https://project-open-data.cio.gov/v1.1/schema
Catalog Describedby	https://project-open-data.cio.gov/v1.1/schema/catalog.json
Harvest Object Id	572cdfd5-ea87-4224-9a31-64611d71a8a0
Harvest Source Id	d3fafa34-0cb9-48f1-ab1d-5b5fdc783806
Harvest Source Title	USDA JSON
License	https://www.usa.gov/publicdomain/label/1.0/
Old Spatial	{"type": "Point", "coordinates": -106.56610600168, 41.222307724193}
Program Code	005:040
Source Datajson Identifier	True
Source Hash	ee393f368c2597ac78cb318e0ba9c438dd526bb0cc7378e33e2a3640c02b5338
Source Schema Version	1.1
Spatial	{"type": "Point", "coordinates": -106.56610600168, 41.222307724193}

Didn't find what you're looking for? Suggest a dataset here.

Data Catalog