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    • Angus Sequence Data: Animal 16378

    Metadata Updated: March 13, 2026

    Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.

    The National Animal Germplasm Program has germplasm for this animal, with the repository number 16378.

    There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the Collection Dataset . In the diagram, the two reads would correspond to read 1 and read 3.

    Resources in this dataset:

    Resource Title: Animal 16378 Sequence Data - SCINet.

    tar file containing 14 files. The files are:

    • RAPiD-Genomics_F112_CSU_136201_P001_WA07_i5-515_i7-103_S7_L003_R1_001.fastq.gz
    • RAPiD-Genomics_F112_CSU_136201_P001_WA07_i5-515_i7-103_S7_L003_R2_001.fastq.gz
    • RAPiD-Genomics-F113-CSU-136201-P001-WA07-i5-515-i7-103_S143_L002_R1_001.fastq.gz
    • RAPiD-Genomics-F113-CSU-136201-P001-WA07-i5-515-i7-103_S143_L002_R2_001.fastq.gz
    • RAPiD-Genomics-F113-CSU-136201-P001-WA07-i5-515-i7-103_S7_L001_R1_001.fastq.gz
    • RAPiD-Genomics-F113-CSU-136201-P001-WA07-i5-515-i7-103_S7_L001_R2_001.fastq.gz
    • RAPiD-Genomics-F114-CSU-136201-P001-WA07-i5-515-i7-103_S7_L003_R1_001.fastq.gz
    • RAPiD-Genomics-F114-CSU-136201-P001-WA07-i5-515-i7-103_S7_L003_R2_001.fastq.gz
    • RAPiD-Genomics_F115_CSU_136201_P001_WA07_i5-515_i7-103_S7_L001_R1_001.fastq.gz
    • RAPiD-Genomics_F115_CSU_136201_P001_WA07_i5-515_i7-103_S7_L001_R2_001.fastq.gz
    • RAPiD-Genomics_F115_CSU_136201_P001_WA07_i5-515_i7-103_S7_L002_R1_001.fastq.gz
    • RAPiD-Genomics_F115_CSU_136201_P001_WA07_i5-515_i7-103_S7_L002_R2_001.fastq.gz
    • RAPiD-Genomics_F116_CSU_136201_P001_WA07_i5-515_i7-103_S362_L002_R1_001.fastq.gz
    • RAPiD-Genomics_F116_CSU_136201_P001_WA07_i5-515_i7-103_S362_L002_R2_001.fastq.gz


    Access & Use Information

    Public: This dataset is intended for public access and use. License: us-pd

    Downloads & Resources

    Dates

    Metadata Created Date March 30, 2024
    Metadata Updated Date March 13, 2026

    Metadata Source

    Harvested from USDA JSON

    Other Data Resources

    Additional Metadata

    Resource Type Dataset
    Metadata Created Date March 30, 2024
    Metadata Updated Date March 13, 2026
    Publisher Agricultural Research Service
    Maintainer
    Identifier 10.15482/USDA.ADC/1529237
    Data Last Modified 2026-02-18
    Public Access Level public
    Bureau Code 005:18
    Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
    Schema Version https://project-open-data.cio.gov/v1.1/schema
    Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
    Harvest Object Id 54931402-e4d2-49fb-bc86-82ecf56ae519
    Harvest Source Id d3fafa34-0cb9-48f1-ab1d-5b5fdc783806
    Harvest Source Title USDA JSON
    License https://www.usa.gov/publicdomain/label/1.0/
    Old Spatial {"type": "Point", "coordinates": -106.56610600168, 41.222307724193}
    Program Code 005:040
    Source Datajson Identifier True
    Source Hash 158f6994ace70dd206b54cd4828166f0ec249446f4339e426ed77a886c6b474f
    Source Schema Version 1.1
    Spatial {"type": "Point", "coordinates": -106.56610600168, 41.222307724193}
    Temporal 2012-01-01/2013-12-31

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