20 datasets found
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Federal
Challenging Medically-Relevant Genes Benchmark Set
National Institute of Standards and Technology —
CMRG v1.00 of a small variant benchmark and structural variant benchmark focused on 273 challenging medically relevant genes for the Genome in a Bottle (GIAB) sample... -
Federal
precisionFDA Truth Challenge V2: Calling variants from short- and long-reads in difficult-to-map regions
National Institute of Standards and Technology —
The precisionFDA Truth Challenge V2 aimed to assess the state-of-the-art of variant calling in difficult-to-map regions and the Major Histocompatibility Complex... -
Federal
NIST Short Tandem Repeat DNA Internet DataBase
National Institute of Standards and Technology —
Short Tandem Repeat DNA Internet DataBase is intended to benefit research and application of short tandem repeat DNA markers for human identity testing. Facts and... -
Federal
Data from: Pathogenesis and transmission of reassorted H1 influenza A viruses detected in North American swine
Department of Agriculture —
Changes in influenza viruses that infect pigs have been observed for over two decades. The evolution of these viruses has led to several new strains. For instance,... -
Federal
Data from: Heritable differences in abundance of bacterial rhizosphere taxa are correlated with fungal necrotrophic pathogen resistance
Department of Agriculture —
This Ag Data Commons submission includes the 94 sunflower paired-end sequencing FASTQ files, the corresponding 16S bacterial FASTQ files, and other relevant data to... -
Federal
High-Throughput Transcriptomics Screen of ToxCast Chemicals in U-2 OS Cells
U.S. Environmental Protection Agency —
Supplemental datafiles for journal article 'High-Throughput Transcriptomics Screen of ToxCast Chemicals in U-2 OS Cells'. -
Federal
Wildfire Transcriptomic Similarity Scoring Data
U.S. Environmental Protection Agency —
This dataset was generated to support the differential expression analysis, transcriptomic similarity scoring analysis, exposure chemistry profiles, mouse pulmonary... -
Federal
From Protein Sequence to Structure: The Next Frontier in Cross-Species Extrapolation for Chemical Safety Evaluations
U.S. Environmental Protection Agency —
Supplemental data for "LaLone CA, Blatz DJ, Jensen MA, Vliet SMF, Mayasich S, Mattingly KZ, Transue TR, Melendez W, Wilkinson A, Simmons CW, Ng C, Zhang C, Zhang Y.... -
Federal
BMC Genomics P. pachyrhizi Supplemental Data
Department of Agriculture —
Data about Phakopsora pachyrhizi, causative agent of soybean rust. Genomics and Bioinformatics Research Unit, Stoneville, MS. Resources in this dataset:Resource... -
Federal
Demonstration of the Sequence Alignment to Predict Across Species Susceptibility Tool for Rapid Assessment of Protein Conservation
U.S. Environmental Protection Agency —
Data file for "Vliet SMF, Hazemi M, Blatz D, Jensen M, Mayasich S, Transue TR, Simmons C, Wilkinson A, LaLone CA. Demonstration of the Sequence Alignment to Predict... -
Federal
First Generation Annotations for the Fathead Minnow (Pimephales promelas) Genome
U.S. Environmental Protection Agency —
The fathead minnow (Pimephales promelas) is a laboratory model organism widely used in regulatory toxicity testing and ecotoxicology research. Despite, the wealth of... -
Federal
Accessing and distributing EMBL data using CORBA (common object request broker architecture)
U.S. Department of Health & Human Services —
Background: The EMBL Nucleotide Sequence Database is a comprehensive database of DNA and RNA sequences and related information traditionally made available in flat-... -
Federal
Data from: Expansion of Proteome-wide <i>Coxiella burnetii </i>Comparative T-cell Epitope Prediction to Include Small Ruminant Hosts
Department of Agriculture —
T-cell epitopes represent sampled environmental- and self-peptides loaded into major histocompatibility complex (MHC) proteins. Bioinformatic tools have been produced... -
Federal
Defining the Biologically Plausible Taxonomic Domain of Applicability of an Adverse Outcome Pathway: A Case Study Linking Nicotinic Acetylcholine Receptor Activation to Colony Death
U.S. Environmental Protection Agency —
Supporting Information for "Jensen, M.A., Blatz, D.J. and LaLone, C.A. (2023), Defining the Biologically Plausible Taxonomic Domain of Applicability of an Adverse... -
Federal
Cross-species molecular docking method to support predictions of species susceptibility to chemical effects
U.S. Environmental Protection Agency —
The advancement of protein structural prediction tools, exemplified by AlphaFold and Iterative Threading ASSEmbly Refinement, has enabled the prediction of protein... -
Federal
Genome-wide Transcription Factor DNA Binding Sites and Gene Regulatory Networks in Clostridium thermocellum
Department of Energy —
Clostridium thermocellum is a thermophilic bacterium recognized for its natural ability to effectively deconstruct cellulosic biomass. While there is a large body of... -
Federal
The Distributed Annotation System
U.S. Department of Health & Human Services —
Background Currently, most genome annotation is curated by centralized groups with limited resources. Efforts to share annotations transparently among multiple groups... -
Federal
Data from: A fast method for the detection of <i>Salmonella</i> Typhimurium cells in egg biofilms on three different surfaces
Department of Agriculture —
Salmonella is a pathogenic microorganism linked to foodborne outbreaks associated with egg and egg products. This microorganism can resist sanitation of the egg... -
Federal
burnpit computational data
U.S. Environmental Protection Agency —
meta data. This dataset is associated with the following publication: Kim, Y.H., J. Rager, I. jaspers, and M. Gilmour. Computational Approach to Link Chemicals in... -
Federal
Identification of differentially expressed genes and networks related to hepatic lipid dysfunction
U.S. Environmental Protection Agency —
Jaleh A. Abedini, Sakshi Handa, Stephen Edwards, Brian Chorley, Hisham El-Masri, Identification of differentially expressed genes and networks related to hepatic...
20 datasets found