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Federal
Data from: Genotypic characterization of the U.S. peanut core collection
Department of Agriculture —
This collection contains supplementary data for the manuscript "Genotypic characterization of the U.S. Peanut Core Collection", which describes genotyping results for... -
Federal
Leptinotarsa decemlineata genome annotations v0.5.3
Department of Agriculture —
The Leptinotarsa decemlineata genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. This dataset presents... -
Federal
Halyomorpha halys Official Gene Set v1.2
Department of Agriculture —
This dataset presents the Halyomorpha halys Official Gene Set (OGS) v1.2. OGSv1.2 is an update of Halyomorpha halys OGSv1.1... -
Federal
Data from: Development of a versatile resource from 1500 diverse genomes for post-genomics research
Department of Agriculture —
This data set contains 32 million annotated SNPs having an average SNP density of 30 SNPs per kb and 12 non-synonymous SNPs per gene model. These SNPs were identified... -
Federal
Oncopeltus fasciatus genome annotations v0.5.3
Department of Agriculture —
The Oncopeltus fasciatus genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The O. fasciatus research... -
Federal
Agrilus planipennis community manual annotations
Department of Agriculture —
Manual annotation at the i5k Workspace@NAL (https://i5k.nal.usda.gov) is the review and improvement of gene models derived from computational gene prediction.... -
Federal
Data from: Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping
Department of Agriculture —
The following is taken directly from the introduction of the paper. In this study, we used a pure drift FST model [11] which assumes all animals originated from the... -
Federal
Data from: Estimation of pool construction and technical error
Department of Agriculture —
Animals were incorporated into pools in different proportions to estimate error and evaluate factors influencing error. Animals were incorporated into 2 types of... -
Federal
Leptinotarsa decemlineata genome assembly 1.0
Department of Agriculture —
The Baylor College of Medicine recently sequenced and annotated the Leptinotarsa decemlineata genome as part of the i5k pilot project. This dataset presents the... -
Federal
Data from: Chromosome-level haplotype-resolved genome assemblies and annotations of Apios americana and Apios priceana
Department of Agriculture —
The data in this collection comprise gene annotations for Apios americana and Apios priceana. Annotations were carried out using the BRAKER3 pipeline (Gabriel et al.,... -
Federal
Manual annotations of Rhyzopertha dominica genome assembly RdoDt3_Drdd8_decomES
Department of Agriculture —
This dataset contains manual annotations from Rhyzopertha dominica community curators, based on genome assembly RdoDt3_Drdd8_decomES.fasta.gz. These annotations are... -
Federal
Hyalella azteca Official Gene Set v1.0
Department of Agriculture —
The Hyalella azteca genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The Hyalella azteca research... -
Federal
Leptinotarsa decemlineata Official Gene set v1.2
Department of Agriculture —
The Leptinotarsa decemlineata genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The L. decemlineata... -
Federal
Hyalella azteca Official Gene Set v1.3
Department of Agriculture —
This dataset presents the Hyalella azteca Official Gene Set OGSv1.3. This is an update to Official Gene Sets OGSv1.0 and OGSv1.2. Official Gene Set hyaazt_OGSv1.3 was... -
Federal
Long-read sequencing data from pure cultures of <i>Escherichia coli</i> O157:H7 and ground beef inoculated with <i>E. coli</i> O157:H7
Department of Agriculture —
Foodborne pathogens are a significant cause of illness and infection with Shiga toxin-producing Escherichia coli (STEC) has the potential to produce life-threatening... -
Federal
Neodiprion lecontei Official Gene Set v1.1
Department of Agriculture —
This dataset presents the Neodiprion Official Gene Set (OGS) v1.1. It was generated using Maker v2.31.8, followed by CrossMap re-mapping of coordinates to genome...