Skip to main content
U.S. flag

An official website of the United States government

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you’ve safely connected to the .gov website. Share sensitive information only on official, secure websites.

Skip to content

Leptinotarsa decemlineata Official Gene set v1.2

Metadata Updated: March 30, 2024

The Leptinotarsa decemlineata genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The L. decemlineata research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.2. OGSv1.1 is an integration of automatic gene predictions from Maker (performed by Dan Hughes at Baylor College of Medicine) with manual annotations by the research community (done via the Apollo manual annotation software). The coordinates of OGSv1.1 were converted to the latest genome assembly, GCF_000500325.1, using coordinates_conversion and remap-gff3, to generate OGSv1.2. If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use: https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use Resources in this dataset:Resource Title: Leptinotarsa decemlineata Official Gene Set OGSv1.2. File Name: lepdec_OGSv1-2.tar.gzResource Description: The attached tar.gz archive (lepdec_OGSv1-2.tar.gz) contains the following files:

  • lepdec_OGSv1.2_GCF_000500325.1_cds.fa - CDS sequences for OGSv1.2
  • lepdec_OGSv1.2_GCF_000500325.1_pep.fa - protein sequences for OGSv1.2
  • lepdec_OGSv1.2_GCF_000500325.1_trans.fa - transcript sequences for OGSv1.2
  • lepdec_OGSv1.2_GCF_000500325.1.gff3 - GFF3 file for OGSv1.2
  • lepdec_OGSv1.2_GCF_000500325.1_removed-features.tsv - a list of features removed between OGSv1.1 and OGSv1.2. The list includes feature type, ID, Name, and owner.
  • lepdec_OGSv1.2_GCF_000500325.1_update-summary.tsv - summary statistics of the features removed between OGSv1.1 and OGSv1.2

Access & Use Information

Public: This dataset is intended for public access and use. License: Creative Commons Attribution Share-Alike

Downloads & Resources

Dates

Metadata Created Date March 30, 2024
Metadata Updated Date March 30, 2024

Metadata Source

Harvested from USDA JSON

Additional Metadata

Resource Type Dataset
Metadata Created Date March 30, 2024
Metadata Updated Date March 30, 2024
Publisher Agricultural Research Service
Maintainer
Identifier 10.15482/USDA.ADC/1457533
Data Last Modified 2024-02-16
Public Access Level public
Bureau Code 005:18
Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
Schema Version https://project-open-data.cio.gov/v1.1/schema
Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
Harvest Object Id b4923c4d-40c3-4433-b12a-eadeec69dd7f
Harvest Source Id d3fafa34-0cb9-48f1-ab1d-5b5fdc783806
Harvest Source Title USDA JSON
License https://creativecommons.org/licenses/by-sa/4.0/
Old Spatial {"type": "MultiPolygon", "coordinates": -414.42626953125, 2.0357034842292, -414.42626953125, 6.1551180860219, -411.56982421875, 6.1551180860219, -411.56982421875, 2.0357034842292, -414.42626953125, 2.0357034842292, -529.892578125, 50.326758435042, -529.892578125, 72.091936180224, -489.111328125, 72.091936180224, -489.111328125, 50.326758435042, -529.892578125, 50.326758435042, -494.6484375, 14.150766165464, -494.6484375, 48.613533667479, -420.8203125, 48.613533667479, -420.8203125, 14.150766165464, -494.6484375, 14.150766165464, -521.630859375, 17.532309292203, -521.630859375, 24.420473295394, -513.544921875, 24.420473295394, -513.544921875, 17.532309292203, -521.630859375, 17.532309292203, -377.9296875, 38.456445292247, -377.9296875, 79.215276293484, -169.1015625, 79.215276293484, -169.1015625, 38.456445292247, -377.9296875, 38.456445292247, -328.7109375, -12.32570540982, -328.7109375, 39.549224717665, -194.4140625, 39.549224717665, -194.4140625, -12.32570540982, -328.7109375, -12.32570540982}
Program Code 005:040
Source Datajson Identifier True
Source Hash 1ec7713ebce9b36d6c9b1ead38a504732c0f79bef9373221531ec6d99f395f40
Source Schema Version 1.1
Spatial {"type": "MultiPolygon", "coordinates": -414.42626953125, 2.0357034842292, -414.42626953125, 6.1551180860219, -411.56982421875, 6.1551180860219, -411.56982421875, 2.0357034842292, -414.42626953125, 2.0357034842292, -529.892578125, 50.326758435042, -529.892578125, 72.091936180224, -489.111328125, 72.091936180224, -489.111328125, 50.326758435042, -529.892578125, 50.326758435042, -494.6484375, 14.150766165464, -494.6484375, 48.613533667479, -420.8203125, 48.613533667479, -420.8203125, 14.150766165464, -494.6484375, 14.150766165464, -521.630859375, 17.532309292203, -521.630859375, 24.420473295394, -513.544921875, 24.420473295394, -513.544921875, 17.532309292203, -521.630859375, 17.532309292203, -377.9296875, 38.456445292247, -377.9296875, 79.215276293484, -169.1015625, 79.215276293484, -169.1015625, 38.456445292247, -377.9296875, 38.456445292247, -328.7109375, -12.32570540982, -328.7109375, 39.549224717665, -194.4140625, 39.549224717665, -194.4140625, -12.32570540982, -328.7109375, -12.32570540982}

Didn't find what you're looking for? Suggest a dataset here.