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Data from: Chromosome-level haplotype-resolved genome assemblies and annotations of Apios americana and Apios priceana

Published by Agricultural Research Service | Department of Agriculture | Catalog Last Checked: May 05, 2026 at 11:41 PM | Dataset Last Updated: March 03, 2026
The data in this collection comprise gene annotations for Apios americana and Apios priceana. Annotations were carried out using the BRAKER3 pipeline (Gabriel et al., 2024). Apios americana produces starchy, high-protein tubers that were used by indigenous Native Americans. Apios americana is found throughout eastern and central North America, from Louisiana in the south to Quebec in the north. Apios priceana is a rare legume species, found scattered locations in the North American Southeast (Alabama, Mississippi, Kentucky, and Tennessee). The plant is federally listed as a threatened species. It has a vining habit and produces an edible, thickened storage root.

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  • apiam.LA2127.gnm1.ann1.QKWH.gene_models_main.bed.gz

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  • apiam.LA2127.gnm1.ann1.QKWH.legume.fam3.VLMQ.gfa.tsv.gz

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  • apiam.LA2127.gnm1.ann1.QKWH.protein_primary.faa.gz

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  • apiam.LA2127.gnm1.ann1.QKWH.cds.fna.gz

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  • MANIFEST.LA2127.gnm1_hap2.ann1.NT2R.yml

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  • apiam.LA2127.gnm1.ann1.QKWH.cds_primary.fna.gz

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  • apiam.LA2127.gnm1.ann1.QKWH.mrna_primary.fna.gz

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  • apiam.LA2127.gnm1_hap2.ann1.NT2R.featid_map.tsv.gz

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  • README.LA2127.gnm1_hap2.ann1.NT2R.yml

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  • apiam.LA2127.gnm1.ann1.QKWH.mrna.fna.gz

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  • apiam.LA2127.gnm1_hap2.ann1.NT2R.cds_primary.fna.gz

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  • apiam.LA2127.gnm1_hap2.ann1.NT2R.protein.faa.gz

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  • apiam.LA2127.gnm1_hap2.ann1.NT2R.gene_models_main.bed.gz

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  • apiam.LA2127.gnm1_hap2.ann1.NT2R.gene_models_main.gff3.gz

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  • apiam.LA2127.gnm1_hap2.ann1.NT2R.iprscan.gff3.gz

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  • apiam.LA2127.gnm1_hap2.ann1.NT2R.protein_primary.faa.gz

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  • apiam.LA2127.gnm1_hap2.ann1.NT2R.legume.fam3.VLMQ.gfa.tsv.gz

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  • apiam.LA2127.gnm1_hap2.ann1.NT2R.mrna.fna.gz

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  • apipr.MO19963523.gnm1_hap2.ann1.PB8C.legume.fam3.VLMQ.gfa.tsv.gz

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  • MANIFEST.MO19963523.gnm1_hap2.ann1.PB8C.yml

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  • apiam.LA2127.gnm1_hap2.ann1.NT2R.mrna_primary.fna.gz

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  • apipr.MO19963523.gnm1_hap2.ann1.PB8C.mrna_primary.fna.gz

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  • README.MO19963523.gnm1_hap2.ann1.PB8C.yml

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  • apipr.MO19963523.gnm1_hap2.ann1.PB8C.featid_map.tsv.gz

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  • apipr.MO19963523.gnm1_hap2.ann1.PB8C.cds_primary.fna.gz

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  • apipr.MO19963523.gnm1_hap2.ann1.PB8C.cds.fna.gz

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  • apipr.MO19963523.gnm1_hap2.ann1.PB8C.protein_primary.faa.gz

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  • apipr.MO19963523.gnm1_hap2.ann1.PB8C.gene_models_main.gff3.gz

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  • apipr.MO19963523.gnm1_hap2.ann1.PB8C.gene_models_main.bed.gz

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  • apipr.MO19963523.gnm1_hap2.ann1.PB8C.mrna.fna.gz

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  • apipr.MO19963523.gnm1.ann1.P2VZ.legume.fam3.VLMQ.gfa.tsv.gz

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  • apipr.MO19963523.gnm1.ann1.P2VZ.gene_models_main.bed.gz

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  • README.MO19963523.gnm1.ann1.P2VZ.yml

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  • apipr.MO19963523.gnm1_hap2.ann1.PB8C.protein.faa.gz

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  • apipr.MO19963523.gnm1.ann1.P2VZ.protein_primary.faa.gz

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  • MANIFEST.MO19963523.gnm1.ann1.P2VZ.yml

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  • apipr.MO19963523.gnm1.ann1.P2VZ.protein.faa.gz

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  • apipr.MO19963523.gnm1.ann1.P2VZ.iprscan.gff3.gz

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  • apipr.MO19963523.gnm1.ann1.P2VZ.mrna_primary.fna.gz

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  • apipr.MO19963523.gnm1.ann1.P2VZ.featid_map.tsv.gz

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  • apipr.MO19963523.gnm1.ann1.P2VZ.mrna.fna.gz

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  • apipr.MO19963523.gnm1.ann1.P2VZ.gene_models_main.gff3.gz

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  • apipr.MO19963523.gnm1.ann1.P2VZ.cds_primary.fna.gz

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  • apipr.MO19963523.gnm1.ann1.P2VZ.cds.fna.gz

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Complete Metadata
@type dcat:Dataset
accessLevel public
bureauCode 
[
  "005:18"
]
contactPoint 
{
  "fn": "Cannon, Steven B.",
  "hasEmail": "mailto:steven.cannon@usda.gov"
}
description <p dir="ltr">The data in this collection comprise gene annotations for Apios americana and Apios priceana. Annotations were carried out using the BRAKER3 pipeline (Gabriel et al., 2024). Apios americana produces starchy, high-protein tubers that were used by indigenous Native Americans. Apios americana is found throughout eastern and central North America, from Louisiana in the south to Quebec in the north. Apios priceana is a rare legume species, found scattered locations in the North American Southeast (Alabama, Mississippi, Kentucky, and Tennessee). The plant is federally listed as a threatened species. It has a vining habit and produces an edible, thickened storage root.</p>
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identifier 10.15482/USDA.ADC/29274848.v1
keyword 
[
  "Apios americana",
  "Apios priceana",
  "Potato bean",
  "Price's potato bean"
]
license https://creativecommons.org/publicdomain/zero/1.0/
modified 2026-03-03
programCode 
[
  "005:040"
]
publisher 
{
  "name": "Agricultural Research Service",
  "@type": "org:Organization"
}
temporal 2025-04-07/2025-04-07
title Data from: Chromosome-level haplotype-resolved genome assemblies and annotations of Apios americana and Apios priceana

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