Data from: Genetic diversity, population structure, and selection of core germplasm sets from the USDA sweetpotato (Ipomoea batatas) collection
R scripts and associated data used to select the sweetpotato core sets described in:
Slonecki, T. J., Rutter, W. B., Olukolu, B. A., Yencho, G. C., Jackson, D. M., & Wadl, P. A. (2023). Genetic diversity, population structure, and selection of breeder germplasm subsets from the USDA sweetpotato (Ipomoea batatas) collection. Frontiers in Plant Science, 13. https://doi.org/10.3389/fpls.2022.1022555
Resources in this dataset:
Title: Sweetpotato_phenotype_classification_scripts
File name: SP_phenotype_classification_scripts_7-29-21.R
Description: R Scripts used to format, classify, and retain individuals with 'rare' phenotypes into the core collections, generating the reduced 508 accession dataset from which the core sets were selected
Title: Sweetpotato_core_set_selection_scripts
File name: Core_set_selection_permutations_8-24-20.R
Description: Core set sampling scripts derived from previous R scripts and data generated in "SP_phenotype_classification_scripts"
Title: Original Phenotype data
File name: Core_Sets_VanRaden_Complete_Passport_Phenotype_July_2021.xlsx
Description: Phenotype data downloaded from GRIN sweetpotato collection and used for core set selection
Title: SP_core_selection_Rdata
File name: SP_core_selection_data_7-30-21.zip
Description: Data sets used in conjunction with Rscripts from Slonecki et. al. 2022
Resources
4 resources available
-
SP_phenotype_classification_scripts_7-29-21.R
R -
Core_set_selection_permutations_8-24-20.R
R -
Core_Sets_VanRaden_Complete_Passport_Phenotype_July_2021.xlsx
XLSX -
SP_core_selection_data_7-30-21.zip
ZIP
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Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| accrualPeriodicity | irregular |
| bureauCode |
[ "005:18" ] |
| contactPoint |
{ "fn": "Rutter, William", "hasEmail": "mailto:William.rutter@ars.usda.gov" } |
| description | <p>R scripts and associated data used to select the sweetpotato core sets described in: Slonecki, T. J., Rutter, W. B., Olukolu, B. A., Yencho, G. C., Jackson, D. M., & Wadl, P. A. (2023). Genetic diversity, population structure, and selection of breeder germplasm subsets from the USDA sweetpotato (Ipomoea batatas) collection. Frontiers in Plant Science, 13. <a href="https://doi.org/10.3389/fpls.2022.1022555">https://doi.org/10.3389/fpls.2022.1022555</a></p> <p>Resources in this dataset:</p> <p>Title: Sweetpotato_phenotype_classification_scripts File name: SP_phenotype_classification_scripts_7-29-21.R Description: R Scripts used to format, classify, and retain individuals with 'rare' phenotypes into the core collections, generating the reduced 508 accession dataset from which the core sets were selected</p> <p>Title: Sweetpotato_core_set_selection_scripts File name: Core_set_selection_permutations_8-24-20.R Description: Core set sampling scripts derived from previous R scripts and data generated in "SP_phenotype_classification_scripts"</p> <p>Title: Original Phenotype data File name: Core_Sets_VanRaden_Complete_Passport_Phenotype_July_2021.xlsx Description: Phenotype data downloaded from GRIN sweetpotato collection and used for core set selection</p> <p>Title: SP_core_selection_Rdata File name: SP_core_selection_data_7-30-21.zip Description: Data sets used in conjunction with Rscripts from Slonecki et. al. 2022</p> |
| distribution |
[ { "@type": "dcat:Distribution", "title": "SP_phenotype_classification_scripts_7-29-21.R", "format": "R", "mediaType": "text/plain", "downloadURL": "https://ndownloader.figshare.com/files/43373202" }, { "@type": "dcat:Distribution", "title": "Core_set_selection_permutations_8-24-20.R", "format": "R", "mediaType": "text/plain", "downloadURL": "https://ndownloader.figshare.com/files/43373205" }, { "@type": "dcat:Distribution", "title": "Core_Sets_VanRaden_Complete_Passport_Phenotype_July_2021.xlsx", "format": "xlsx", "mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet", "downloadURL": "https://ndownloader.figshare.com/files/43373208" }, { "@type": "dcat:Distribution", "title": "SP_core_selection_data_7-30-21.zip", "format": "zip", "mediaType": "application/zip", "downloadURL": "https://ndownloader.figshare.com/files/43373211" } ] |
| identifier | 10.15482/USDA.ADC/1528523 |
| keyword |
[ "ARS", "NP301", "NP303", "core germplasm set", "data.gov", "genotype", "phenotype", "sweet potatoes" ] |
| license | https://www.usa.gov/publicdomain/label/1.0/ |
| modified | 2025-11-21 |
| programCode |
[ "005:040" ] |
| publisher |
{ "name": "Agricultural Research Service", "@type": "org:Organization" } |
| spatial |
"{"type": "Point", "coordinates": [-440.07165530697, 32.796163806572]}"
|
| temporal | 2021-07-21/2021-07-21 |
| title | Data from: Genetic diversity, population structure, and selection of core germplasm sets from the USDA sweetpotato (Ipomoea batatas) collection |
