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Data from: BBGD: an online database for blueberry genomic data

Metadata Updated: September 21, 2023

This dataset is supplemental to the article "BBGD: an online database for blueberry genomic data," (2007); it is titled "list of genes printed on microarray slides." The article, "BBGD: an online database for blueberry genomic data," (2007) involving blueberry cold hardiness experiments has a list of all the genes that were printed on microarray slides. This dataset, supplemental to the article, is called: "list of genes printed on microarray slides." 1471-2229-7-5-s1.xls 663k. By using the BBGD database, researchers developed EST-based markers for mapping, and have identified a number of "candidate" cold tolerance genes that are highly expressed in blueberry flower buds after exposure to low temperatures. BBGD (http://bioinformatics.towson.edu/BBGD/) is a public online database, and was developed for blueberry genomics. BBGD is both a sequence and gene expression database: it stores both EST and microarray data, and allows scientists to correlate expression profiles with gene function. Presently, the main focus of the database is the identification of genes in blueberry that are significantly induced or suppressed after low temperature exposure. Data was collected sometime between 2000 and 2007 - exact dates are unknown.

Access & Use Information

Public: This dataset is intended for public access and use. License: Creative Commons Attribution

Downloads & Resources

Dates

Metadata Created Date November 10, 2020
Metadata Updated Date September 21, 2023

Metadata Source

Harvested from USDA JSON

Additional Metadata

Resource Type Dataset
Metadata Created Date November 10, 2020
Metadata Updated Date September 21, 2023
Publisher Agricultural Research Service
Maintainer
Identifier d134be9f-7ca8-497f-aa5b-292c295bf5bb
Data Last Modified 2022-01-18
Public Access Level public
Bureau Code 005:18
Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
Schema Version https://project-open-data.cio.gov/v1.1/schema
Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
Data Dictionary https://data.nal.usda.gov/dataset/data-bbgd-online-database-blueberry-genomic-data/resource/1705568b-4c89-4bc5-9b35-33f11e88f90a
Harvest Object Id aee3e187-6c01-44bb-ae77-157c81c8cff6
Harvest Source Id d3fafa34-0cb9-48f1-ab1d-5b5fdc783806
Harvest Source Title USDA JSON
License https://creativecommons.org/licenses/by/4.0/
Old Spatial {"type":"Polygon","coordinates":-171.79111060289,7.2205414900965,-12.20855,7.2205414900965,-12.20855,83.64513,-171.79111060289,83.64513,-171.79111060289,7.2205414900965}
Program Code 005:040
Source Datajson Identifier True
Source Hash 26d0be0cedc0aa539faa6f0318bcf0c4f8317781f46819f771fc47636b3b37fe
Source Schema Version 1.1
Spatial {"type":"Polygon","coordinates":-171.79111060289,7.2205414900965,-12.20855,7.2205414900965,-12.20855,83.64513,-171.79111060289,83.64513,-171.79111060289,7.2205414900965}

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