CottonGen BLAST
CottonGen offers BLAST with genome, transcriptome, peptide and marker sequence databases from Gossypium species. This can be done using nucleotide sequences or peptide sequences. BLAST functionality is similar to that on NCBI.
BLAST Programs:
blastn: Search a nucleotide database using a nucleotide query.
blastx: Search protein database using a translated nucleotide query.
tblastn: Search translated nucleotide database using a protein query.
blastp: Search protein database using a protein query.
Resources in this dataset:Resource Title: Website Pointer for CottonGen BLAST Search. File Name: Web Page, url: https://www.cottongen.org/blast CottonGen offers BLAST with genome, transcriptome, peptide and marker sequence databases from *Gossypium* species. This can be done using nucleotide sequences or peptide sequences. BLAST functionality is similar to that on NCBI. Enter or upload FASTA sequence(s) to query and select BLAST database.
BLAST Programs:
blastn: Search a nucleotide database using a nucleotide query.
blastx: Search protein database using a translated nucleotide query.
tblastn: Search translated nucleotide database using a protein query.
blastp: Search protein database using a protein query.
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Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[
"005:18"
]
|
| contactPoint |
{
"fn": "Main, Dorrie",
"hasEmail": "mailto:dorrie@wsu.edu"
}
|
| description | <p>CottonGen offers BLAST with genome, transcriptome, peptide and marker sequence databases from <em>Gossypium</em> species. This can be done using nucleotide sequences or peptide sequences. BLAST functionality is similar to that on NCBI.</p> <p>BLAST Programs:</p> <ul> <li>blastn: Search a nucleotide database using a nucleotide query.</li> <li>blastx: Search protein database using a translated nucleotide query.</li> <li>tblastn: Search translated nucleotide database using a protein query.</li> <li> <p>blastp: Search protein database using a protein query.</p> <div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Website Pointer for CottonGen BLAST Search.</p> <p>File Name: Web Page, url: <a href="https://www.cottongen.org/blast" target="_blank">https://www.cottongen.org/blast</a> </p><p>CottonGen offers BLAST with genome, transcriptome, peptide and marker sequence databases from *Gossypium* species. This can be done using nucleotide sequences or peptide sequences. BLAST functionality is similar to that on NCBI. Enter or upload FASTA sequence(s) to query and select BLAST database. </p></li> </ul> <p>BLAST Programs:</p> <ul> <li>blastn: Search a nucleotide database using a nucleotide query.</li> <li>blastx: Search protein database using a translated nucleotide query.</li> <li>tblastn: Search translated nucleotide database using a protein query.</li> <li>blastp: Search protein database using a protein query.</li></ul><p></p></li> </ul> |
| distribution |
[
{
"@type": "dcat:Distribution",
"title": "https://www.cottongen.org/blast",
"mediaType": "text/html",
"downloadURL": "https://www.cottongen.org/blast"
}
]
|
| identifier | 10113/AA23030 |
| keyword |
[
"ARS",
"CottonGen",
"NCBI BLAST",
"NP301",
"Online database",
"data.gov"
]
|
| license | https://www.usa.gov/publicdomain/label/1.0/ |
| modified | 2024-02-13 |
| programCode |
[
"005:040"
]
|
| publisher |
{
"name": "Agricultural Research Service",
"@type": "org:Organization"
}
|
| title | CottonGen BLAST |
