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Federal
Data from: Genotypic characterization of the U.S. peanut core collection
Department of Agriculture —
This collection contains supplementary data for the manuscript "Genotypic characterization of the U.S. Peanut Core Collection", which describes genotyping results for... -
Federal
Evaluating accuracy of DNA pool construction based on white blood cell counts
Department of Agriculture —
Pooling individual samples prior to DNA extraction can mitigate the cost of DNA extraction and genotyping; however, these methods need to accurately generate equal... -
Federal
Data from: Genetic variation among 481 diverse soybean accessions
Department of Agriculture —
This data is from the manuscript titled: "Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing". SNP calls were obtained from... -
Federal
Data from: Chromosome-scale Genome Assembly of Lewis Flax (Linum lewisii Pursh.)
Department of Agriculture —
Within this dataset: Genome assembly of Linum lewisii (NDSU_LiLewi_1.0.fasta) First 9 scaffolds represent all 9 chromosomes (e.g. Scaffold_1 is Chromosome 1,... -
Federal
Data from: Estimation of pool construction and technical error
Department of Agriculture —
Animals were incorporated into pools in different proportions to estimate error and evaluate factors influencing error. Animals were incorporated into 2 types of... -
Federal
Data from: Characterization of Adult Transcriptomes from the Omnivorous Lady Beetle Coleomegilla maculata Fed Pollen or Insect Egg Diet
Department of Agriculture —
Expressed genes from two individual sibling specimens of Coleomegilla maculata (Coleoptera: Coccinellidae). One individual was fed only insect eggs as an adult, and... -
Federal
Manual annotations of Rhyzopertha dominica genome assembly RdoDt3_Drdd8_decomES
Department of Agriculture —
This dataset contains manual annotations from Rhyzopertha dominica community curators, based on genome assembly RdoDt3_Drdd8_decomES.fasta.gz. These annotations are... -
Federal
Leptinotarsa decemlineata Official Gene set v1.2
Department of Agriculture —
The Leptinotarsa decemlineata genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The L. decemlineata... -
Federal
Data from: Microbiota of maize kernels as influenced by Aspergillus flavus infection in susceptible and resistant inbreds
Department of Agriculture —
This repository contains the code and data to reproduce the figures and analyses in the paper "Microbiota of maize kernels as influenced by Aspergillus flavus... -
Federal
Data from: Putative neofunctionalization of a Poales-specific EXO70 clade
Department of Agriculture —
EXO70s are uniquely expanded in land plants compared to all other eukaryotic lineages. The functional implications of this expansion and diversification on the... -
Federal
Data from: Legacy genetics of Arachis cardenasii in the peanut crop - v2
Department of Agriculture —
[Note: This version supersedes version 1: https://doi.org/10.15482/USDA.ADC/1520889 Changes in version 2: A new Dataset was added - DataSet1-CardAlleles-iii.xlsx... -
Federal
Long-read sequencing data from pure cultures of <i>Escherichia coli</i> O157:H7 and ground beef inoculated with <i>E. coli</i> O157:H7
Department of Agriculture —
Foodborne pathogens are a significant cause of illness and infection with Shiga toxin-producing Escherichia coli (STEC) has the potential to produce life-threatening... -
Federal
Functional annotation for 15 diverse arthropod genomes
Department of Agriculture —
We present the annotation results of 15 arthropod proteomes using an open source, open access and containerized pipeline for genome-scale functional annotation of... -
Federal
Code from: Aspergillus flavus expression database (AFED), a comprehensive resource for Aspergillus flavus gene expression profiling
Department of Agriculture —
Public RNA-Seq data was used to quantify gene expression abundance for 604 Aspergillus flavus samples from 52 experiments (bioprojects). Using abundance data, we...