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Federal
Data from: Genotypic characterization of the U.S. peanut core collection
Department of Agriculture —
This collection contains supplementary data for the manuscript "Genotypic characterization of the U.S. Peanut Core Collection", which describes genotyping results for... -
Federal
Leptinotarsa decemlineata genome annotations v0.5.3
Department of Agriculture —
The Leptinotarsa decemlineata genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. This dataset presents... -
Federal
Code from: Aspergillus flavus expression database (AFED), a comprehensive resource for Aspergillus flavus gene expression profiling
Department of Agriculture —
Public RNA-Seq data was used to quantify gene expression abundance for 604 Aspergillus flavus samples from 52 experiments (bioprojects). Using abundance data, we... -
Federal
Data from: Estimation of pool construction and technical error
Department of Agriculture —
Animals were incorporated into pools in different proportions to estimate error and evaluate factors influencing error. Animals were incorporated into 2 types of... -
Federal
Data from: Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping
Department of Agriculture —
The following is taken directly from the introduction of the paper. In this study, we used a pure drift FST model [11] which assumes all animals originated from the... -
Federal
Data from polishCLR: Example input genome assemblies
Department of Agriculture —
[ NOTE - Data files added 2022-11-01: Test long reads - test.1.filtered.bam_.gz Test short reads R1 - testpolish_R1.fastq Test short reads R2 - testpolish_R2.fastq... -
Federal
Agrilus planipennis community manual annotations
Department of Agriculture —
Manual annotation at the i5k Workspace@NAL (https://i5k.nal.usda.gov) is the review and improvement of gene models derived from computational gene prediction.... -
Federal
Data from: A fast method for the detection of <i>Salmonella</i> Typhimurium cells in egg biofilms on three different surfaces
Department of Agriculture —
Salmonella is a pathogenic microorganism linked to foodborne outbreaks associated with egg and egg products. This microorganism can resist sanitation of the egg... -
Federal
Data from: Complex Reticulation in Backbone Subfamily Relationships in Leguminosae
Department of Agriculture —
Contradictory lines of evidence have made it difficult to resolve the phylogenetic history of the legume diversification era; this is true for the backbone topology,... -
Federal
Data from: Chromosome-level haplotype-resolved genome assemblies and annotations of Apios americana and Apios priceana
Department of Agriculture —
The data in this collection comprise gene annotations for Apios americana and Apios priceana. Annotations were carried out using the BRAKER3 pipeline (Gabriel et al.,... -
Federal
Data from: Genetic variation among 481 diverse soybean accessions
Department of Agriculture —
This data is from the manuscript titled: "Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing". SNP calls were obtained from... -
Federal
Data from: Agile Genetics: Single gene resolution without the fuss
Department of Agriculture —
These files are 250bp Illumina MiSeq paired-end sequencing reads in fastq format. Libraries were prepared from DNA fragments amplified from tomato bulk (heterogenous)... -
Federal
Manual annotations of Rhyzopertha dominica genome assembly RdoDt3_Drdd8_decomES
Department of Agriculture —
This dataset contains manual annotations from Rhyzopertha dominica community curators, based on genome assembly RdoDt3_Drdd8_decomES.fasta.gz. These annotations are... -
Federal
Genes of viral origin in the Fopius arisanus genome
Department of Agriculture —
Fopius arisanus (Sonan) is a braconid wasp (subfamily Opiinae) and biological control agent of a broad range of tephritid fruit fly species, including the global... -
Federal
Functional annotation for 15 diverse arthropod genomes
Department of Agriculture —
We present the annotation results of 15 arthropod proteomes using an open source, open access and containerized pipeline for genome-scale functional annotation of... -
Federal
Data from: Chromosome-scale Genome Assembly of Lewis Flax (Linum lewisii Pursh.)
Department of Agriculture —
Within this dataset: Genome assembly of Linum lewisii (NDSU_LiLewi_1.0.fasta) First 9 scaffolds represent all 9 chromosomes (e.g. Scaffold_1 is Chromosome 1,... -
Federal
Data from: Putative neofunctionalization of a Poales-specific EXO70 clade
Department of Agriculture —
EXO70s are uniquely expanded in land plants compared to all other eukaryotic lineages. The functional implications of this expansion and diversification on the... -
Federal
Halyomorpha halys Official Gene Set v1.2
Department of Agriculture —
This dataset presents the Halyomorpha halys Official Gene Set (OGS) v1.2. OGSv1.2 is an update of Halyomorpha halys OGSv1.1... -
Federal
Hyalella azteca Official Gene Set v1.0
Department of Agriculture —
The Hyalella azteca genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The Hyalella azteca research... -
Federal
Long-read sequencing data from pure cultures of <i>Escherichia coli</i> O157:H7 and ground beef inoculated with <i>E. coli</i> O157:H7
Department of Agriculture —
Foodborne pathogens are a significant cause of illness and infection with Shiga toxin-producing Escherichia coli (STEC) has the potential to produce life-threatening...