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Federal
Leptinotarsa decemlineata genome annotations v0.5.3
Department of Agriculture —
The Leptinotarsa decemlineata genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. This dataset presents... -
Federal
Evaluating accuracy of DNA pool construction based on white blood cell counts
Department of Agriculture —
Pooling individual samples prior to DNA extraction can mitigate the cost of DNA extraction and genotyping; however, these methods need to accurately generate equal... -
Federal
Data from: Genotypic characterization of the U.S. peanut core collection
Department of Agriculture —
This collection contains supplementary data for the manuscript "Genotypic characterization of the U.S. Peanut Core Collection", which describes genotyping results for... -
Federal
Data from: A fast method for the detection of <i>Salmonella</i> Typhimurium cells in egg biofilms on three different surfaces
Department of Agriculture —
Salmonella is a pathogenic microorganism linked to foodborne outbreaks associated with egg and egg products. This microorganism can resist sanitation of the egg... -
Federal
Oncopeltus fasciatus genome annotations v0.5.3
Department of Agriculture —
The Oncopeltus fasciatus genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The O. fasciatus research... -
Federal
Data from: Complex Reticulation in Backbone Subfamily Relationships in Leguminosae
Department of Agriculture —
Contradictory lines of evidence have made it difficult to resolve the phylogenetic history of the legume diversification era; this is true for the backbone topology,... -
Federal
Agrilus planipennis community manual annotations
Department of Agriculture —
Manual annotation at the i5k Workspace@NAL (https://i5k.nal.usda.gov) is the review and improvement of gene models derived from computational gene prediction.... -
Federal
Halyomorpha halys Official Gene Set v1.2
Department of Agriculture —
This dataset presents the Halyomorpha halys Official Gene Set (OGS) v1.2. OGSv1.2 is an update of Halyomorpha halys OGSv1.1... -
Federal
Data from: Development of a versatile resource from 1500 diverse genomes for post-genomics research
Department of Agriculture —
This data set contains 32 million annotated SNPs having an average SNP density of 30 SNPs per kb and 12 non-synonymous SNPs per gene model. These SNPs were identified... -
Federal
Data from: Chromosome-scale Genome Assembly of Lewis Flax (Linum lewisii Pursh.)
Department of Agriculture —
Within this dataset: Genome assembly of Linum lewisii (NDSU_LiLewi_1.0.fasta) First 9 scaffolds represent all 9 chromosomes (e.g. Scaffold_1 is Chromosome 1,... -
Federal
Data from: Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping
Department of Agriculture —
The following is taken directly from the introduction of the paper. In this study, we used a pure drift FST model [11] which assumes all animals originated from the... -
Federal
Manual annotations of Rhyzopertha dominica genome assembly RdoDt3_Drdd8_decomES
Department of Agriculture —
This dataset contains manual annotations from Rhyzopertha dominica community curators, based on genome assembly RdoDt3_Drdd8_decomES.fasta.gz. These annotations are... -
Federal
Functional annotation for 15 diverse arthropod genomes
Department of Agriculture —
We present the annotation results of 15 arthropod proteomes using an open source, open access and containerized pipeline for genome-scale functional annotation of... -
Federal
Hyalella azteca Official Gene Set v1.0
Department of Agriculture —
The Hyalella azteca genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The Hyalella azteca research... -
Federal
Leptinotarsa decemlineata Official Gene set v1.2
Department of Agriculture —
The Leptinotarsa decemlineata genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The L. decemlineata... -
Federal
Neodiprion lecontei Official Gene Set v1.1
Department of Agriculture —
This dataset presents the Neodiprion Official Gene Set (OGS) v1.1. It was generated using Maker v2.31.8, followed by CrossMap re-mapping of coordinates to genome... -
Federal
Hyalella azteca Official Gene Set v1.3
Department of Agriculture —
This dataset presents the Hyalella azteca Official Gene Set OGSv1.3. This is an update to Official Gene Sets OGSv1.0 and OGSv1.2. Official Gene Set hyaazt_OGSv1.3 was... -
Federal
Long-read sequencing data from pure cultures of <i>Escherichia coli</i> O157:H7 and ground beef inoculated with <i>E. coli</i> O157:H7
Department of Agriculture —
Foodborne pathogens are a significant cause of illness and infection with Shiga toxin-producing Escherichia coli (STEC) has the potential to produce life-threatening... -
Federal
Data from: Putative neofunctionalization of a Poales-specific EXO70 clade
Department of Agriculture —
EXO70s are uniquely expanded in land plants compared to all other eukaryotic lineages. The functional implications of this expansion and diversification on the... -
Federal
Data from: Legacy genetics of Arachis cardenasii in the peanut crop - v2
Department of Agriculture —
[Note: This version supersedes version 1: https://doi.org/10.15482/USDA.ADC/1520889 Changes in version 2: A new Dataset was added - DataSet1-CardAlleles-iii.xlsx...