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Organisms living in honey bees and honey bee colonies form large associative holobiont communities that are integral to bee biology. High-throughput sequencing approaches to characterize these...
Search relevance: 1.00 | Views last month: 5 | Catalog Last Checked: August 01, 2026 at 04:53 AM -
Two sets of triplicate SBRs were operated for ~three months in three-liter glass beakers with an active volume of two liters in a temperature controlled room, as described in Maile-Moskowitz et...
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This is a dataset consisting of donor-specific collections of 78 metagenomes (13 / donor) and 143 metagenome-assembled genomes (MAGs) representing the gut microbiomes of six healthy adult human...
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The raw sequencing data for this study have been deposited in the European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB40814 with the following BioSample numbers: SAMEA7465213...
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This repository contains raw and intermediate data files as well as analysis code from the manuscript "Evaluating the Analytical Performance of Direct-to-Consumer Gut Microbiome Testing Services"....
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The dataset contains the raw data used for the correlation analyses. This dataset is associated with the following publications: Schaeffer, B., J. SantoDomingo, and B. Kreakie. SSWR 4.3 Tools...
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Dataset includes the SRA accessions of the sequencing data used to benchmark the MetaCompare 2.0 pipeline as well as tables of bacterial taxa and antibiotic resistance genes used to perform the...
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To assess the variability of low-abundance oligonucleotide detection across sample matrices, we spiked DNA reference standards (meta sequins) into replicate wastewater DNA extracts at...
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The raw sequencing data for this study have been deposited in the European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB40814 with the following BioSample numbers: SAMEA7465213...
Search relevance: 1.00 | Views last month: 1 | Catalog Last Checked: August 03, 2026 at 12:48 AM -
This data release provides phytoplankton and fish environmental DNA (eDNA) and cyanotoxin biosynthesis gene abundance data from an algal bloom at Ash River Boat Docks on Kabetogama Lake (USGS site...
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This provides taxonomic data (as relative abundances) derived from metagenomic sequencing of greywater samples. This dataset is associated with the following publication: Nagarkar, M., S. Keely,...
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An ex vivo study of the effects on the human gut microbiota of the food additive sodium butyrate (SB) at a concentration of 3.5 g/L. Incubations were performed on fecal slurries from 24 donors...
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An ex vivo study of the effects on the human gut microbiota of the food additive butylated hydroxyanisole (BHA) at a concentration of 0.35 g/L. Incubations were performed on fecal slurries from 24...
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Log10 fecal score ratios for eligible microbial source tracking qPCR assays. This dataset is associated with the following publication: Brumfield, K.D., J.A. Cotruvo, O. Shanks, M. Sivaganesan,...
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To evaluate the ability of precipitation-based environmental DNA (eDNA) sample collection and mitochondrial 12S metabarcoding sequencing to reconstruct well-studied fish communities in lakes and...
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An ex vivo study of the effects of exogenous hydrogen sulfide on the human gut microbiota by testing the addition of sodium sulfide at a concentration of 0.39 g/L. Incubations were performed on...
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An ex vivo study of the effects on the human gut microbiota of Senna seed extracts. Data collected following 48-hour incubations include: shotgun metagenomic DNA sequencing, biomass (cell counts),...
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This data release provides phytoplankton environmental DNA data and cyanotoxin gene qPCR data from an algal bloom at Ash River Boat Docks on Kabetogama Lake, Voyageurs National Park, Minnesota,...
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Although known to play a vital role in nutrient digestion and absorption and immune function, the small intestinal microbiota (SIM) is often overlooked due to difficulty accessing the anatomical...
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