Catalog - Data.gov

#1 Federal

Data from: Supplementation with soluble or insoluble rice-bran fibers increases short-chain fatty acid producing bacteria in the gut microbiota in vitro

Organization: Department of Agriculture
Dataset Last Updated: May 02, 2025

The SHIME® (Simulator of the Human Intestinal Microbial Ecology) was used for in vitro cultivation of the human gut microbiota (3 donors) with additions of either soluble or insoluble fractions...

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Search relevance: 1.00 | Views last month: 9 | Catalog Last Checked: May 05, 2026 at 11:40 PM

#2 Federal

Data from: Impact of Ivermectin on the Gut Microbial Ecosystem

Organization: Department of Agriculture
Dataset Last Updated: June 25, 2024

The SHIME® (Simulator of the Human Intestinal Microbial Ecology) was used for in vitro cultivation of the human gut microbiota (3 donors) prior to and following the addition of ivermectin to the...

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Search relevance: 1.00 | Views last month: 5 | Catalog Last Checked: May 05, 2026 at 11:39 PM

#3 Federal

Data from: Metagenomes and Metagenome-Assembled Genomes from Ex Vivo Fecal Incubations of Six Unique Donors

Organization: Department of Agriculture
Dataset Last Updated: November 21, 2025

This is a dataset consisting of donor-specific collections of 78 metagenomes (13 / donor) and 143 metagenome-assembled genomes (MAGs) representing the gut microbiomes of six healthy adult human...

Search relevance: 1.00 | Views last month: 4 | Catalog Last Checked: May 05, 2026 at 11:40 PM

#4 Federal

Data From: Preservation of conjugated primary bile acids by oxygenation of the small intestinal microbiota in vitro

Organization: Department of Agriculture
Dataset Last Updated: January 16, 2026

Taking advantage of the flexibility and control only attained through application of an in vitro platform, we were able develop a model of small intestinal gut microbiota that we used to address...

Search relevance: 1.00 | Views last month: 4 | Catalog Last Checked: May 05, 2026 at 11:39 PM

#5 Federal

Analytical Performance of Direct-to-Consumer Gut Microbiome Testing Services

Organization: National Institute of Standards and Technology
Dataset Last Updated: June 05, 2024

This repository contains raw and intermediate data files as well as analysis code from the manuscript "Evaluating the Analytical Performance of Direct-to-Consumer Gut Microbiome Testing Services"....

Search relevance: 1.00 | Views last month: 2 | Catalog Last Checked: August 02, 2025 at 03:39 PM

#6 Federal

Data from: Impact of Baizhu, Daqingye, and Hehuanhua extracts on the human gut microbiome

Organization: Department of Agriculture
Dataset Last Updated: May 22, 2026

An ex vivo study of the effects on the human gut microbiota of extracts from Atractylodes macrocephala, Isatis indigotica, and Mimosa flower. Data collected following 48-hour incubations include:...

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Search relevance: 1.00 | Views last month: 0 | Catalog Last Checked: June 12, 2026 at 11:17 PM

#7 Federal

Data from: Tomato seed extract promotes health of the gut microbiota and demonstrates a potential new way to valorize tomato waste

Organization: Department of Agriculture
Dataset Last Updated: May 22, 2026

An ex vivo study of the effects on the human gut microbiota of tomato seed extracts. Data collected following 48-hour incubations include: shotgun metagenomic DNA sequencing, biomass (cell...

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Search relevance: 1.00 | Views last month: 0 | Catalog Last Checked: June 12, 2026 at 11:17 PM

#8 Federal

Data from: The ex vivo effects of ethanolic extractions of black cumin seed, turmeric root, and Ceylon cinnamon bark on the human gut microbiota

Organization: Department of Agriculture
Dataset Last Updated: May 22, 2026

An ex vivo study of the effects on the human gut microbiota of extracts derived from black cumin seed, turmeric root, and Ceylon cinnamon bark. Data collected following 48-hour incubations...

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Search relevance: 1.00 | Views last month: 0 | Catalog Last Checked: June 12, 2026 at 11:17 PM

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Data from: Supplementation with soluble or insoluble rice-bran fibers increases short-chain fatty acid producing bacteria in the gut microbiota <i>in vitro</i>

Data from: Impact of Ivermectin on the Gut Microbial Ecosystem

Data from: Metagenomes and Metagenome-Assembled Genomes from Ex Vivo Fecal Incubations of Six Unique Donors

Data From: Preservation of conjugated primary bile acids by oxygenation of the small intestinal microbiota <i>in vitro</i>

Analytical Performance of Direct-to-Consumer Gut Microbiome Testing Services

Data from: Impact of Baizhu, Daqingye, and Hehuanhua extracts on the human gut microbiome

Data from: Tomato seed extract promotes health of the gut microbiota and demonstrates a potential new way to valorize tomato waste

Data from: The <i>ex vivo</i> effects of ethanolic extractions of black cumin seed, turmeric root, and Ceylon cinnamon bark on the human gut microbiota