Search datasets
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CMRG v1.00 of a small variant benchmark and structural variant benchmark focused on 273 challenging medically relevant genes for the Genome in a Bottle (GIAB) sample HG002 (aka Ashkenazi son)....
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The precisionFDA Truth Challenge V2 aimed to assess the state-of-the-art of variant calling in difficult-to-map regions and the Major Histocompatibility Complex (MHC). Starting with FASTQ files,...
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Supplemental datafiles for journal article 'High-Throughput Transcriptomics Screen of ToxCast Chemicals in U-2 OS Cells'.
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Changes in influenza viruses that infect pigs have been observed for over two decades. The evolution of these viruses has led to several new strains. For instance, one such strain known as H1N2...
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Jaleh A. Abedini, Sakshi Handa, Stephen Edwards, Brian Chorley, Hisham El-Masri, Identification of differentially expressed genes and networks related to hepatic lipid dysfunction, Toxicology and...
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Salmonella is a pathogenic microorganism linked to foodborne outbreaks associated with egg and egg products. This microorganism can resist sanitation of the egg processing equipment and form...
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The advancement of protein structural prediction tools, exemplified by AlphaFold and Iterative Threading ASSEmbly Refinement, has enabled the prediction of protein structures across species based...
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The fathead minnow (Pimephales promelas) is a laboratory model organism widely used in regulatory toxicity testing and ecotoxicology research. Despite, the wealth of toxicological data for this...
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Supplemental data for "LaLone CA, Blatz DJ, Jensen MA, Vliet SMF, Mayasich S, Mattingly KZ, Transue TR, Melendez W, Wilkinson A, Simmons CW, Ng C, Zhang C, Zhang Y. From Protein Sequence to...
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Supporting Information for "Jensen, M.A., Blatz, D.J. and LaLone, C.A. (2023), Defining the Biologically Plausible Taxonomic Domain of Applicability of an Adverse Outcome Pathway: A Case Study...
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This Ag Data Commons submission includes the 94 sunflower paired-end sequencing FASTQ files, the corresponding 16S bacterial FASTQ files, and other relevant data to the study described...
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Short Tandem Repeat DNA Internet DataBase is intended to benefit research and application of short tandem repeat DNA markers for human identity testing. Facts and sequence information on each STR...
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T-cell epitopes represent sampled environmental- and self-peptides loaded into major histocompatibility complex (MHC) proteins. Bioinformatic tools have been produced to predict these interactions...
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Data about Phakopsora pachyrhizi, causative agent of soybean rust. Genomics and Bioinformatics Research Unit, Stoneville, MS. Resources in this dataset:Resource Title: All supplemental files. File...
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Data file for "Vliet SMF, Hazemi M, Blatz D, Jensen M, Mayasich S, Transue TR, Simmons C, Wilkinson A, LaLone CA. Demonstration of the Sequence Alignment to Predict Across Species Susceptibility...
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Consumption of food contaminated with Shiga toxin-producing Escherichia coli (STEC) causes millions of illnesses in the United States annually. Long-read sequencing could be used to reduce the...
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Background Currently, most genome annotation is curated by centralized groups with limited resources. Efforts to share annotations transparently among multiple groups have not yet been...
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meta data. This dataset is associated with the following publication: Kim, Y.H., J. Rager, I. jaspers, and M. Gilmour. Computational Approach to Link Chemicals in Anthropogenic Smoke Particulate...
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This dataset was generated to support the differential expression analysis, transcriptomic similarity scoring analysis, exposure chemistry profiles, mouse pulmonary toxicity measures and...
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Background: The EMBL Nucleotide Sequence Database is a comprehensive database of DNA and RNA sequences and related information traditionally made available in flat-file format. Queries...
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