Neodiprion lecontei Official Gene Set v1.1
This dataset presents the Neodiprion Official Gene Set (OGS) v1.1. It was generated using Maker v2.31.8, followed by CrossMap re-mapping of coordinates to genome assembly Nlec1.1 (https://www.ncbi.nlm.nih.gov/assembly/GCA_001263575.2/).
This dataset is now obsolete - a new genome assembly, iyNeoleco1.1 (https://www.ncbi.nlm.nih.gov/assembly/GCF_021901455.1) has been produced by the Ag100Pest project, with annotations from NCBI's RefSeq resource. Resources in this dataset:Resource Title: Neodiprion lecontei Official Gene Set v1.1. File Name: neolec_OGSv1.1.tar.gzResource Description: The files in this directory are derived from Neolec OGSv1.0 (not publicly released). The gff3 file was updated to assembly GCA_001263575.2 (https://www.ncbi.nlm.nih.gov/assembly/GCA_001263575.2) using CrossMap v0.2.8 (http://crossmap.sourceforge.net/).
neolec_OGSv1.1.gff3: Neolec OGSv1.0, updated to GCA_001263575.2
neolec_OGSv1.1_removed.tsv: Features from Neolec OGSv1.0 that were removed in the update
neolec_OGSv1.1_summary.tsv: The % of individual features from Neolec OGSv1.0 that were retained in the update
Nlec_v1_transcripts_renamed_alphabetized.fasta: Transcript sequences derived from Neolec OGSv1.0
Nlec_v1_proteins_renamed_alphabetized.fasta: Protein sequences derived from Neolec OGSv1.0
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Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[
"005:18"
]
|
| contactPoint |
{
"fn": "Geib, Scott",
"hasEmail": "mailto:scott.geib@usda.gov"
}
|
| description | <p>This dataset presents the <em>Neodiprion</em> Official Gene Set (OGS) v1.1. It was generated using Maker v2.31.8, followed by CrossMap re-mapping of coordinates to genome assembly Nlec1.1 (<a href="https://www.ncbi.nlm.nih.gov/assembly/GCA_001263575.2/">https://www.ncbi.nlm.nih.gov/assembly/GCA_001263575.2/</a>).</p> <p>This dataset is now obsolete - a new genome assembly, iyNeoleco1.1 (<a href="https://www.ncbi.nlm.nih.gov/assembly/GCF_021901455.1">https://www.ncbi.nlm.nih.gov/assembly/GCF_021901455.1</a>) has been produced by the Ag100Pest project, with annotations from NCBI's RefSeq resource. </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Neodiprion lecontei Official Gene Set v1.1.</p> <p>File Name: neolec_OGSv1.1.tar.gz</p><p>Resource Description: The files in this directory are derived from Neolec OGSv1.0 (not publicly released). The gff3 file was updated to assembly GCA_001263575.2 (<a href="https://www.ncbi.nlm.nih.gov/assembly/GCA_001263575.2">https://www.ncbi.nlm.nih.gov/assembly/GCA_001263575.2</a>) using CrossMap v0.2.8 (<a href="http://crossmap.sourceforge.net/">http://crossmap.sourceforge.net/</a>).</p> <p>neolec_OGSv1.1.gff3: Neolec OGSv1.0, updated to GCA_001263575.2 neolec_OGSv1.1_removed.tsv: Features from Neolec OGSv1.0 that were removed in the update neolec_OGSv1.1_summary.tsv: The % of individual features from Neolec OGSv1.0 that were retained in the update Nlec_v1_transcripts_renamed_alphabetized.fasta: Transcript sequences derived from Neolec OGSv1.0 Nlec_v1_proteins_renamed_alphabetized.fasta: Protein sequences derived from Neolec OGSv1.0 </p></li></ul><p></p> |
| distribution |
[
{
"@type": "dcat:Distribution",
"title": "neolec_OGSv1.1.tar.gz",
"format": "gz",
"mediaType": "application/x-gzip",
"downloadURL": "https://ndownloader.figshare.com/files/44528075"
}
]
|
| identifier | 10.15482/USDA.ADC/1527886 |
| keyword |
[
"ARS",
"Neodiprion lecontei",
"arthropods",
"data.gov",
"i5k"
]
|
| license | https://creativecommons.org/licenses/by-sa/4.0/ |
| modified | 2025-11-21 |
| programCode |
[
"005:040"
]
|
| publisher |
{
"name": "Agricultural Research Service",
"@type": "org:Organization"
}
|
| spatial |
"{"type": "Point", "coordinates": [-84.5037, 38.0406]}"
|
| temporal | 2018-05-01/2018-05-01 |
| title | Neodiprion lecontei Official Gene Set v1.1 |
