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    • MetaCompare 2.0: Data used for pipeline benchmarking and source code

    Metadata Updated: February 28, 2025

    Dataset includes the SRA accessions of the sequencing data used to benchmark the MetaCompare 2.0 pipeline as well as tables of bacterial taxa and antibiotic resistance genes used to perform the risk assessments. A link to the GitHub page where the pipeline source code can be found is also provided.

    This dataset is associated with the following publication: Rumi, M., M. Oh, B. Davis, C. Brown, J. Adeesh, P. Vikesland, A. Pruden, and L. Zhang. MetaCompare 2.0: Differential ranking of ecological and human health resistome risks. FEMS Microbiology Ecology. Oxford University Press, OXFORD, UK, 100(12): fiae155, (2024).

    Access & Use Information

    Public: This dataset is intended for public access and use. License: See this page for license information.

    Downloads & Resources

    References

    https://doi.org/10.1093/femsec/fiae155

    Dates

    Metadata Created Date February 28, 2025
    Metadata Updated Date February 28, 2025

    Metadata Source

    Harvested from EPA ScienceHub

    Other Data Resources

    Additional Metadata

    Resource Type Dataset
    Metadata Created Date February 28, 2025
    Metadata Updated Date February 28, 2025
    Publisher U.S. EPA Office of Research and Development (ORD)
    Maintainer
    Identifier https://doi.org/10.23719/1532026
    Data Last Modified 2024-06-05
    Public Access Level public
    Bureau Code 020:00
    Schema Version https://project-open-data.cio.gov/v1.1/schema
    Harvest Object Id b26358e6-bafb-41b0-9f57-ae138261505c
    Harvest Source Id 04b59eaf-ae53-4066-93db-80f2ed0df446
    Harvest Source Title EPA ScienceHub
    License https://pasteur.epa.gov/license/sciencehub-license-non-epa-generated.html
    Program Code 020:000
    Publisher Hierarchy U.S. Government > U.S. Environmental Protection Agency > U.S. EPA Office of Research and Development (ORD)
    Related Documents https://doi.org/10.1093/femsec/fiae155
    Source Datajson Identifier True
    Source Hash afe4aea29b5143ff3c2c4bd8236137b69fb3f07be039580c451468184c2e8996
    Source Schema Version 1.1

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