Manual annotations of Rhyzopertha dominica genome assembly RdoDt3_Drdd8_decomES
Resources
1 resource available
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Rhyzopertha-dominica-manual-annotations-presubmission.tar.gz
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Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[ "005:18" ] |
| contactPoint |
{ "fn": "Oppert, Brenda", "hasEmail": "mailto:bso@ksu.edu" } |
| description | <p>This dataset contains manual annotations from Rhyzopertha dominica community curators, based on genome assembly RdoDt3_Drdd8_decomES.fasta.gz. These annotations are direct exports from Apollo 2.6 (<a href="https://doi.org/10.5281/zenodo.5015109">https://doi.org/10.5281/zenodo.5015109</a>), hosted by the i5k Workspace@NAL (<a href="https://i5k.nal.usda.gov/">https://i5k.nal.usda.gov/</a>). Manual annotations are temporary and will be reviewed by the i5k Workspace@NAL and submitted to NCBI's GenBank database after review. </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Manual annotations of Rhyzopertha dominica genome assembly RdoDt3_Drdd8_decomES.</p> <p>File Name: Rhyzopertha-dominica-manual-annotations-presubmission.tar.gz</p><p>Resource Description: The files contained within this directory are manual annotations from the Rhyzopertha dominica genome assembly RdoDt3_Drdd8_decomES.fasta.gz. These annotations are direct exports from Apollo 2.6, hosted by the i5k Workspace@NAL. Manual annotations are temporary and will be reviewed by the i5k Workspace@NAL and submitted to NCBI's GenBank database after review. </p> <ul> <li>Annotations.cdna.fasta.gz: cDNA sequences of the manual annotations</li> <li>Annotations.cds.fasta.gz: coding (CDS) sequences of the manual annotations</li> <li>Annotations.gff3.gz: manual annotations in the GFF3 format.</li> <li>Annotations.peptide.fasta.gz: polypeptide sequences of the manual annotations.</li> <li>RdoDt3_Drdd8_decomES.fasta.gz: The genome assembly that the manual annotations are based on.</li></ul><p></p></li> </ul> |
| distribution |
[ { "@type": "dcat:Distribution", "title": "Rhyzopertha-dominica-manual-annotations-presubmission.tar.gz", "format": "gz", "mediaType": "application/x-gzip", "downloadURL": "https://ndownloader.figshare.com/files/44531234" } ] |
| identifier | 10.15482/USDA.ADC/1524749 |
| keyword |
[ "ARS", "Insects", "Rhyzopertha dominica", "data.gov", "genome annotation", "i5k" ] |
| license | https://creativecommons.org/licenses/by-sa/4.0/ |
| modified | 2025-11-21 |
| programCode |
[ "005:040" ] |
| publisher |
{ "name": "Agricultural Research Service", "@type": "org:Organization" } |
| spatial |
"{"type": "Point", "coordinates": [-96.6297555, 39.190887]}"
|
| temporal | 2022-03-04/2022-03-04 |
| title | Manual annotations of Rhyzopertha dominica genome assembly RdoDt3_Drdd8_decomES |