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    • Fish connectivity mapping intermediate data files and outputs

    Metadata Updated: November 12, 2020

    RLWrankedLists.tar.gz:These lists linked to various chemical treatment conditions serve as the target collection of Cmap. Probes of the entire microarray are sorted based on their log fold changes over control conditions. RLWsignatures2015.tar.gz: These signatures linked to various chemical treatment conditions serve as queries in Cmap. This dataset is not publicly accessible because: too big in size. It can be accessed through the following means: located in the High Performance Computing archive /asm/FISHTOX/TAR_BALLs/fishCmap.tar.gz. Format: Fish connectivity mapping involves working with a large amount of data. Of primary interest to other researchers and general public are probably the rank-ordered gene lists and gene signatures. The former acts as a database-like target while the latter as queries. Along with fish Cmap outputs, they are contained in the file fishCmap.tar.gz as RLWrankedLists.tar.gz and RLWsignatures2015.tar.gz.

    This dataset is associated with the following publication: Wang , R., A. Biales , N. Garcia-Reyero, E. Perkins, D. Villeneuve, G. Ankley, and D. Bencic. Fish Connectivity Mapping: Linking Chemical Stressors by Their MOA-Driven Transcriptomic Profiles. BMC Genomics. BioMed Central Ltd, London, UK, 17(84): 1-20, (2016).

    Access & Use Information

    Public: This dataset is intended for public access and use. License: See this page for license information.

    Downloads & Resources

    No file downloads have been provided. The publisher may provide downloads in the future or they may be available from their other links.

    References

    https://doi.org/10.1186/s12864-016-2406-y

    Dates

    Metadata Created Date November 12, 2020
    Metadata Updated Date November 12, 2020

    Metadata Source

    Harvested from EPA ScienceHub

    Other Data Resources

    Additional Metadata

    Resource Type Dataset
    Metadata Created Date November 12, 2020
    Metadata Updated Date November 12, 2020
    Publisher U.S. EPA Office of Research and Development (ORD)
    Maintainer
    Identifier A-s1s7-138
    Data Last Modified 2015-11-09
    Public Access Level public
    Bureau Code 020:00
    Schema Version https://project-open-data.cio.gov/v1.1/schema
    Data Dictionary https://pasteur.epa.gov/uploads/138/documents/CmapGeneListsSignatures.dictionary.xlsx
    Data Dictionary Type application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
    Harvest Object Id c3ec8d1d-0deb-4ffa-86e2-e0a0f6583992
    Harvest Source Id 04b59eaf-ae53-4066-93db-80f2ed0df446
    Harvest Source Title EPA ScienceHub
    License https://pasteur.epa.gov/license/sciencehub-license.html
    Program Code 020:095
    Publisher Hierarchy U.S. Government > U.S. Environmental Protection Agency > U.S. EPA Office of Research and Development (ORD)
    Related Documents https://doi.org/10.1186/s12864-016-2406-y
    Source Datajson Identifier True
    Source Hash 1f1b8997deb559d94fb1be6ac35ad77b22fdac19
    Source Schema Version 1.1

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