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Data from: Haplotype-resolved chromosome-level genome assembly of creeping bentgrass, <i>Agrostis stolonifera</i>

Published by Agricultural Research Service | Department of Agriculture | Catalog Last Checked: August 01, 2026 at 04:50 AM | Dataset Last Updated: January 22, 2026
Genome sequence with gene annotation files of the creeping bentgrass cultivar 'Declaration' genome assembly reported in the manuscript "Haplotype-resolved chromosome-level genome assembly of creeping bentgrass, Agrostis stolonifera". Both haplotype assemblies from the manuscript are combined. The genome sequence is the 'creep_bentv1.0_hap1_hap2.fasta' file which contains both haplotype assemblies from the manuscript combined. The haplotypes are also combined in files for gene annotation (creep_bentv1.0_hap1_hap2.gff), transcript sequences (creep_bentv1.0_hap1_hap2_cds.fasta), protein sequences (creep_bentv1.0_hap1_hap2_pep.fasta), and the transposable element annotation (creep_bentv1.0_hap1_hap2_TE_anno.gff). For usability, additional files are separated by haplotype for the gene annotation (creep_bentv1.0_hap1.gff and creep_bentv1.0_hap2.gff), transcript sequences (creep_bentv1.0_hap1_cds.fasta and creep_bentv1.0_hap2_cds.fasta), and protein sequences (creep_bentv1.0_hap1_pep.fasta and creep_bentv1.0_hap2_pep.fasta).

Resources

13 resources available

  • BioProject: PRJNA1317528 Creeping bentgrass haplotype2 genome assembly

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  • BioProject: PRJNA1317529 Creeping bentgrass haplotype 1 genome assembly

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  • creep_bentv1.0_hap1_hap2_pep.fasta.gz

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  • creep_bentv1.0_hap1_hap2_cds.fasta.gz

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  • creep_bentv1.0_hap1_hap2_TE_anno.gff.gz

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  • creep_bentv1.0_hap1_hap2.fasta.gz

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  • creep_bentv1.0_hap1_cds.fasta.gz

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  • creep_bentv1.0_hap1_pep.fasta.gz

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  • creep_bentv1.0_hap2_cds.fasta.gz

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  • creep_bentv1.0_hap1.gff

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  • creep_bentv1.0_hap2_pep.fasta.gz

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  • creep_bentv1.0_hap2.gff

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  • creep_bentv1.0_hap1_hap2.gff.gz

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Complete Metadata
@type dcat:Dataset
accessLevel public
bureauCode 
[
  "005:18"
]
contactPoint 
{
  "fn": "Robbins, Matthew D.",
  "hasEmail": "mailto:matthew.robbins@usda.gov"
}
description <p dir="ltr">Genome sequence with gene annotation files of the creeping bentgrass cultivar 'Declaration' genome assembly reported in the manuscript "Haplotype-resolved chromosome-level genome assembly of creeping bentgrass,<i> </i><i>Agrostis stolonifera</i>". Both haplotype assemblies from the manuscript are combined. The genome sequence is the 'creep_bentv1.0_hap1_hap2.fasta' file which contains both haplotype assemblies from the manuscript combined. The haplotypes are also combined in files for gene annotation (creep_bentv1.0_hap1_hap2.gff), transcript sequences (creep_bentv1.0_hap1_hap2_cds.fasta), protein sequences (creep_bentv1.0_hap1_hap2_pep.fasta), and the transposable element annotation (creep_bentv1.0_hap1_hap2_TE_anno.gff). For usability, additional files are separated by haplotype for the gene annotation (creep_bentv1.0_hap1.gff and creep_bentv1.0_hap2.gff), transcript sequences (creep_bentv1.0_hap1_cds.fasta and creep_bentv1.0_hap2_cds.fasta), and protein sequences (creep_bentv1.0_hap1_pep.fasta and creep_bentv1.0_hap2_pep.fasta).</p>
distribution 
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identifier 10.15482/USDA.ADC/30081199.v3
keyword 
[
  "annotation",
  "polyploidy",
  "subgenomes",
  "synteny",
  "transposable elements"
]
license https://www.usa.gov/publicdomain/label/1.0/
modified 2026-01-22
programCode 
[
  "005:040"
]
publisher 
{
  "name": "Agricultural Research Service",
  "@type": "org:Organization"
}
temporal 2021-02-08/2021-02-08
title Data from: Haplotype-resolved chromosome-level genome assembly of creeping bentgrass, <i>Agrostis stolonifera</i>

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