Data from: Genetic mapping and QTL analysis for peanut smut resistance
This collection contains supplementary information for the manuscript “Genetic mapping and QTL analysis for peanut smut resistance”, which reports the genetic map and quantitative trait loci associated with resistance to peanut smut, a disease caused by the fungus Thecaphora frezii. The information includes genotyping data of a 103 recombinant inbred line (RIL) population {susceptible Arachis hypogaea subsp.hypogaea × resistant synthetic amphidiploid [(A. correntina × A. cardenasii) × A. batizocoi]⁴ˣ} and parental lines, generated with the Axiom_Arachis2 SNP array.
For more information about this dataset contact: Renee Arias: Renee.Arias@usda.gov or Alicia Massa: Alicia.Massa@usda.gov Resources in this dataset:Resource Title: RILs of the mapping population. File Name: RIL_population.JPGResource Title: Data Dictionary. File Name: readme.txtResource Title: Supplementary Data 1: SNP genotypes as called by the Axiom Analysis Suite File name: SD01_RILs_SNPs_whole_Axiom_Arachis2.txt . File Name: SD01_RILs_SNPs_whole_Axiom_Arachis2.txt.zipResource Description: Supplementary Data 1: SNP genotypes as called by the Axiom Analysis Suite
File name: SD01_RILs_SNPs_whole_Axiom_Arachis2.txt
Single nucleotide polymorphism genotyping of a 103 RIL population and parental lines generated with the Arachis_Axiom2 SNP array.
Resource Software Recommended: Axiom_Arachis2,url: https://www.thermofisher.com/us/en/home/life-science/microarray-analysis/microarray-analysis-instruments-software-services/microarray-analysis-software/axiom-analysis-suite.html Resource Title: Supplementary Data 2: Genotyping calls in VCF format File name: SD02_RILs_SNPs_whole_Axiom_Arachis2.vcf. File Name: SD02_core_RILs_SNPs_AxiomArachis2.vcf.zipResource Description: Supplementary Data 2: Genotyping calls in VCF format
File name: SD02_RILs_SNPs_whole_Axiom_Arachis2.vcf
Core SNP set used to characterize the RIL population and progenitors.
Resources
4 resources available
-
SD01_RILs_SNPs_whole_Axiom_Arachis2.txt_1.zip
ZIP -
SD02_core_RILs_SNPs_Axiom_Arachis2.vcf__1.zip
ZIP -
RIL_population.JPG
JPG -
readme_5.txt
TXT
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Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[
"005:18"
]
|
| contactPoint |
{
"fn": "Arias, Renee S.",
"hasEmail": "mailto:Renee.Arias@usda.gov"
}
|
| description | <p>This collection contains supplementary information for the manuscript “Genetic mapping and QTL analysis for peanut smut resistance”, which reports the genetic map and quantitative trait loci associated with resistance to peanut smut, a disease caused by the fungus <em>Thecaphora frezii</em>. The information includes genotyping data of a 103 recombinant inbred line (RIL) population {susceptible <em>Arachis hypogaea</em> subsp.<em>hypogaea</em> × resistant synthetic amphidiploid [(<em>A. correntina</em> × <em>A. cardenasii</em>) × <em>A. batizocoi</em>]⁴ˣ} and parental lines, generated with the Axiom_Arachis2 SNP array. </p> <p><br></p> <p>For more information about this dataset contact: Renee Arias: Renee.Arias@usda.gov or Alicia Massa: Alicia.Massa@usda.gov </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: RILs of the mapping population.</p> <p>File Name: RIL_population.JPG</p></li><br><li><p>Resource Title: Data Dictionary.</p> <p>File Name: readme.txt</p></li><br><li><p>Resource Title: Supplementary Data 1: SNP genotypes as called by the Axiom Analysis Suite File name: SD01_RILs_SNPs_whole_Axiom_Arachis2.txt .</p> <p>File Name: SD01_RILs_SNPs_whole_Axiom_Arachis2.txt.zip</p><p>Resource Description: Supplementary Data 1: SNP genotypes as called by the Axiom Analysis Suite File name: SD01_RILs_SNPs_whole_Axiom_Arachis2.txt Single nucleotide polymorphism genotyping of a 103 RIL population and parental lines generated with the Arachis_Axiom2 SNP array. </p><p>Resource Software Recommended: Axiom_Arachis2,url: <a href="https://www.thermofisher.com/us/en/home/life-science/microarray-analysis/microarray-analysis-instruments-software-services/microarray-analysis-software/axiom-analysis-suite.html">https://www.thermofisher.com/us/en/home/life-science/microarray-analysis/microarray-analysis-instruments-software-services/microarray-analysis-software/axiom-analysis-suite.html</a> </p></li><br><li><p>Resource Title: Supplementary Data 2: Genotyping calls in VCF format File name: SD02_RILs_SNPs_whole_Axiom_Arachis2.vcf.</p> <p>File Name: SD02_core_RILs_SNPs_Axiom<em>Arachis2.vcf</em>.zip</p><p>Resource Description: Supplementary Data 2: Genotyping calls in VCF format File name: SD02_RILs_SNPs_whole_Axiom_Arachis2.vcf Core SNP set used to characterize the RIL population and progenitors. </p></li></ul><p></p> |
| distribution |
[
{
"@type": "dcat:Distribution",
"title": "SD01_RILs_SNPs_whole_Axiom_Arachis2.txt_1.zip",
"format": "zip",
"mediaType": "application/zip",
"downloadURL": "https://ndownloader.figshare.com/files/44529527"
},
{
"@type": "dcat:Distribution",
"title": "SD02_core_RILs_SNPs_Axiom_Arachis2.vcf__1.zip",
"format": "zip",
"mediaType": "application/zip",
"downloadURL": "https://ndownloader.figshare.com/files/44529530"
},
{
"@type": "dcat:Distribution",
"title": "RIL_population.JPG",
"format": "JPG",
"mediaType": "image/jpeg",
"downloadURL": "https://ndownloader.figshare.com/files/44529533"
},
{
"@type": "dcat:Distribution",
"title": "readme_5.txt",
"format": "txt",
"mediaType": "text/plain",
"downloadURL": "https://ndownloader.figshare.com/files/44529536"
}
]
|
| identifier | 10.15482/USDA.ADC/1522387 |
| keyword |
[
"ARS",
"Arachis",
"Arachis hypogaea",
"Arachis_Axiom2 SNP array",
"NP301",
"NP303",
"SNP",
"Smut Resistance",
"data.gov",
"peanut",
"peanut smut"
]
|
| license | https://www.usa.gov/publicdomain/label/1.0/ |
| modified | 2026-02-24 |
| programCode |
[
"005:040"
]
|
| publisher |
{
"name": "Agricultural Research Service",
"@type": "org:Organization"
}
|
| spatial |
"{"type": "Point", "coordinates": [-63.967895507813, -32.793431700307]}"
|
| temporal | 2016-01-01/2018-12-31 |
| title | Data from: Genetic mapping and QTL analysis for peanut smut resistance |
