Data from: A whole-genome assembly of St. Augustine grass and visualizing diversity within the species
Variant data in the format of a variant call format file (.vcf) produced from 79 diverse diploid St. Augustine grass accessions producing 760,159 variants from the article 'A whole-genome assembly of St. Augustine grass and visualizing diversity within the species'.St. Augustine grass leaf samples were obtained in the greenhouse, then utilized for sequencing. Reads were utilized for variant calling to produce the variant call format file (VCF) made available here. Additional details are provided in the manuscript.
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Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[
"005:18"
]
|
| contactPoint |
{
"fn": "Hulse-Kemp, Amanda",
"hasEmail": "mailto:amanda.hulse-kemp@usda.gov"
}
|
| description | <p dir="ltr">Variant data in the format of a variant call format file (.vcf) produced from 79 diverse diploid St. Augustine grass accessions producing 760,159 variants from the article 'A whole-genome assembly of St. Augustine grass and visualizing diversity within the species'.</p><p dir="ltr">St. Augustine grass leaf samples were obtained in the greenhouse, then utilized for sequencing. Reads were utilized for variant calling to produce the variant call format file (VCF) made available here. Additional details are provided in the manuscript.</p> |
| distribution |
[
{
"@type": "dcat:Distribution",
"title": "Stsec_flippedch4_ncbiFinal.vcf",
"format": "vcf",
"mediaType": "text/plain",
"downloadURL": "https://ndownloader.figshare.com/files/44575864"
}
]
|
| identifier | 10.15482/USDA.ADC/25234093.v1 |
| keyword |
[
"ARS",
"Stenotaphrum secundatum",
"data.gov",
"genotypes",
"st. augustinegrass"
]
|
| license | https://www.usa.gov/publicdomain/label/1.0/ |
| modified | 2026-03-30 |
| programCode |
[
"005:040"
]
|
| publisher |
{
"name": "Agricultural Research Service",
"@type": "org:Organization"
}
|
| spatial |
"{"type": "Point", "coordinates": [-78.673154711723, 35.773879974583]}"
|
| temporal | 2023-09-25/2023-09-25 |
| title | Data from: A whole-genome assembly of St. Augustine grass and visualizing diversity within the species |
