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  • CottonGen CottonCyc Pathways Database

    Metadata Updated: November 10, 2020

    The CottonGen CottonCyc Pathways Database, part of CottonGen, supports searching and browsing the following CottonCyc databases:

    Cyc pathways for JGI v2.0 G. raimondii D5 genome assembly

    This Cyc database was constructed using PathwayTools version 20.0 using the gene models from the JGI v2.0 D5 genome assembly of Gossypium raimondii. There has been no manual curation of this Cyc database. Pathway predictions were made using PathwayTools and in-silico v2.1 annotations as provided by JGI.

    Cyc pathways for CGP-BGI v1.0 G. hirsutum AD1 genome assembly

    This Cyc database was constructed using PathwayTools version 20.0 using the gene models from the CGP-BGI v1.0 AD1 genome assembly of Gossypium hirsutum. There has been no manual curation of this Cyc database. Pathway predictions were made using PathwayTools and in-silico v1.0 annotations as provided by CGP-BGI. Search parameters include genes, proteins, RNAs, compounds, reactions, pathways, growth media, and BLAST search.

    Access & Use Information

    Public: This dataset is intended for public access and use. License: Creative Commons CCZero

    Downloads & Resources

    Dates

    Metadata Created Date November 10, 2020
    Metadata Updated Date November 10, 2020

    Metadata Source

    Harvested from USDA JSON

    Additional Metadata

    Resource Type Dataset
    Metadata Created Date November 10, 2020
    Metadata Updated Date November 10, 2020
    Publisher Agricultural Research Service
    Maintainer
    Identifier d88235f1-9a2f-4f1f-b07d-4522c723472c
    Data Last Modified 2019-08-23
    Public Access Level public
    Bureau Code 005:18
    Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
    Schema Version https://project-open-data.cio.gov/v1.1/schema
    Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
    Harvest Object Id d6c85cb3-8613-43ee-8278-de2836fc589d
    Harvest Source Id d3fafa34-0cb9-48f1-ab1d-5b5fdc783806
    Harvest Source Title USDA JSON
    License https://creativecommons.org/publicdomain/zero/1.0/
    Program Code 005:040
    Source Datajson Identifier True
    Source Hash b3747491bd94931411c126c8f4ff06224361af58
    Source Schema Version 1.1

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