Skip to main content
U.S. flag

An official website of the United States government

BEAST log data from: Characterizing a century of genetic diversity and contemporary antigenic diversity of N1 neuraminidase in IAV from North American swine

Published by Agricultural Research Service | Department of Agriculture | Catalog Last Checked: May 05, 2026 at 11:42 PM | Dataset Last Updated: November 21, 2025
These are the ".log" files from "Characterizing a century of genetic diversity and contemporary antigenic diversity of N1 neuraminidase in Influenza A virus (IAV) from North American swine" generated in BEAST and used to plot molecular substitution rates and calculate statistical distances between posterior distributions of these rates. The names of these files communicate information about the various BEAST runs using the following format: cladeOrLineageName_replicate_substitutionModel_treePrior_MCMCiterations_dateOfRunWithin2021.log where replicate is not always included Resources in this dataset:Resource Title: BEAST log file for clade N1.C.2.1. File Name: N1C21_SRD06_strict_GMRF_200MNov9.log.zipResource Software Recommended: Tracer v1.7.1,url: http://tree.bio.ed.ac.uk/software/tracer/ Resource Title: BEAST log file for clade N1.C.2. File Name: N1C2_SRD06_strict_GMRF_200MNov2.log.zipResource Software Recommended: Tracer v1.7.1,url: http://tree.bio.ed.ac.uk/software/tracer/ Resource Title: BEAST log file for clade N1.C.3.1. File Name: N1C31_SRD06_strict_GMRF200M.log.zipResource Software Recommended: Tracer v1.7.1,url: http://tree.bio.ed.ac.uk/software/tracer/ Resource Title: BEAST log file for clade N1.C.3.2. File Name: N1C32_SRD09_strict_GMRF_200MMay21.log.zipResource Software Recommended: Tracer v1.7.1,url: http://tree.bio.ed.ac.uk/software/tracer/ Resource Title: BEAST log file for clade N1.C.3. File Name: N1C3_r1_hkyGamma4_GMRF_200MMay20.log.zipResource Software Recommended: Tracer v1.7.1,url: http://tree.bio.ed.ac.uk/software/tracer/ Resource Title: BEAST log file for clade N1.P. File Name: N1P_SRD06_strict_GMRF_200MAug2.log.zipResource Software Recommended: Tracer v1.7.1,url: http://tree.bio.ed.ac.uk/software/tracer/ Resource Title: BEAST log file for the classical swine N1 lineage. File Name: N1classical_r1_SRD06_UCLN_GMRF_200MMay21.log.zipResource Software Recommended: Tracer v1.7.1,url: http://tree.bio.ed.ac.uk/software/tracer/

Resources

7 resources available

  • N1C21_SRD06_strict_GMRF_200M_Nov9.log_.zip

    ZIP
    Download

  • N1C2_SRD06_strict_GMRF_200M_Nov2.log_.zip

    ZIP
    Download

  • N1C31_SRD06_strict_GMRF_200M.log_.zip

    ZIP
    Download

  • N1C32_SRD09_strict_GMRF_200M_May21.log_.zip

    ZIP
    Download

  • N1C3_r1_hkyGamma4_GMRF_200M_May20.log_.zip

    ZIP
    Download

  • N1P_SRD06_strict_GMRF_200M_Aug2.log_.zip

    ZIP
    Download

  • N1classical_r1_SRD06_UCLN_GMRF_200M_May21.log_.zip

    ZIP
    Download

Find Related Datasets

Search by Tags

Click any tag below to search for similar datasets

Complete Metadata
@type dcat:Dataset
accessLevel public
bureauCode 
[
  "005:18"
]
contactPoint 
{
  "fn": "Anderson, Tavis",
  "hasEmail": "mailto:tavis.anderson@usda.gov"
}
description <p>These are the ".log" files from "Characterizing a century of genetic diversity and contemporary antigenic diversity of N1 neuraminidase in Influenza A virus (IAV) from North American swine" generated in BEAST and used to plot molecular substitution rates and calculate statistical distances between posterior distributions of these rates. The names of these files communicate information about the various BEAST runs using the following format: cladeOrLineageName_replicate_substitutionModel_treePrior_MCMCiterations_dateOfRunWithin2021.log where replicate is not always included </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: BEAST log file for clade N1.C.2.1.</p> <p>File Name: N1C21_SRD06_strict_GMRF_200M<em>Nov9.log</em>.zip</p><p>Resource Software Recommended: Tracer v1.7.1,url: <a href="http://tree.bio.ed.ac.uk/software/tracer/">http://tree.bio.ed.ac.uk/software/tracer/</a> </p></li><br><li><p>Resource Title: BEAST log file for clade N1.C.2.</p> <p>File Name: N1C2_SRD06_strict_GMRF_200M<em>Nov2.log</em>.zip</p><p>Resource Software Recommended: Tracer v1.7.1,url: <a href="http://tree.bio.ed.ac.uk/software/tracer/">http://tree.bio.ed.ac.uk/software/tracer/</a> </p></li><br><li><p>Resource Title: BEAST log file for clade N1.C.3.1.</p> <p>File Name: N1C31_SRD06_strict_GMRF<em>200M.log</em>.zip</p><p>Resource Software Recommended: Tracer v1.7.1,url: <a href="http://tree.bio.ed.ac.uk/software/tracer/">http://tree.bio.ed.ac.uk/software/tracer/</a> </p></li><br><li><p>Resource Title: BEAST log file for clade N1.C.3.2.</p> <p>File Name: N1C32_SRD09_strict_GMRF_200M<em>May21.log</em>.zip</p><p>Resource Software Recommended: Tracer v1.7.1,url: <a href="http://tree.bio.ed.ac.uk/software/tracer/">http://tree.bio.ed.ac.uk/software/tracer/</a> </p></li><br><li><p>Resource Title: BEAST log file for clade N1.C.3.</p> <p>File Name: N1C3_r1_hkyGamma4_GMRF_200M<em>May20.log</em>.zip</p><p>Resource Software Recommended: Tracer v1.7.1,url: <a href="http://tree.bio.ed.ac.uk/software/tracer/">http://tree.bio.ed.ac.uk/software/tracer/</a> </p></li><br><li><p>Resource Title: BEAST log file for clade N1.P.</p> <p>File Name: N1P_SRD06_strict_GMRF_200M<em>Aug2.log</em>.zip</p><p>Resource Software Recommended: Tracer v1.7.1,url: <a href="http://tree.bio.ed.ac.uk/software/tracer/">http://tree.bio.ed.ac.uk/software/tracer/</a> </p></li><br><li><p>Resource Title: BEAST log file for the classical swine N1 lineage.</p> <p>File Name: N1classical_r1_SRD06_UCLN_GMRF_200M<em>May21.log</em>.zip</p><p>Resource Software Recommended: Tracer v1.7.1,url: <a href="http://tree.bio.ed.ac.uk/software/tracer/">http://tree.bio.ed.ac.uk/software/tracer/</a> </p></li></ul><p></p>
distribution 
[
  {
    "@type": "dcat:Distribution",
    "title": "N1C21_SRD06_strict_GMRF_200M_Nov9.log_.zip",
    "format": "zip",
    "mediaType": "application/zip",
    "downloadURL": "https://ndownloader.figshare.com/files/44532863"
  },
  {
    "@type": "dcat:Distribution",
    "title": "N1C2_SRD06_strict_GMRF_200M_Nov2.log_.zip",
    "format": "zip",
    "mediaType": "application/zip",
    "downloadURL": "https://ndownloader.figshare.com/files/44532869"
  },
  {
    "@type": "dcat:Distribution",
    "title": "N1C31_SRD06_strict_GMRF_200M.log_.zip",
    "format": "zip",
    "mediaType": "application/zip",
    "downloadURL": "https://ndownloader.figshare.com/files/44532872"
  },
  {
    "@type": "dcat:Distribution",
    "title": "N1C32_SRD09_strict_GMRF_200M_May21.log_.zip",
    "format": "zip",
    "mediaType": "application/zip",
    "downloadURL": "https://ndownloader.figshare.com/files/44532875"
  },
  {
    "@type": "dcat:Distribution",
    "title": "N1C3_r1_hkyGamma4_GMRF_200M_May20.log_.zip",
    "format": "zip",
    "mediaType": "application/zip",
    "downloadURL": "https://ndownloader.figshare.com/files/44532878"
  },
  {
    "@type": "dcat:Distribution",
    "title": "N1P_SRD06_strict_GMRF_200M_Aug2.log_.zip",
    "format": "zip",
    "mediaType": "application/zip",
    "downloadURL": "https://ndownloader.figshare.com/files/44532884"
  },
  {
    "@type": "dcat:Distribution",
    "title": "N1classical_r1_SRD06_UCLN_GMRF_200M_May21.log_.zip",
    "format": "zip",
    "mediaType": "application/zip",
    "downloadURL": "https://ndownloader.figshare.com/files/44532890"
  }
]
identifier 10.15482/USDA.ADC/1528285
keyword 
[
  "ARS",
  "BEAST",
  "Bayesian statistics",
  "Influenza A virus",
  "NP103",
  "Swine",
  "data.gov",
  "evolution",
  "molecular substitution rate",
  "neuraminidase",
  "phylogenetic",
  "rate of evolution"
]
license https://www.usa.gov/publicdomain/label/1.0/
modified 2025-11-21
programCode 
[
  "005:040"
]
publisher 
{
  "name": "Agricultural Research Service",
  "@type": "org:Organization"
}
spatial 
"{"type": "MultiPolygon", "coordinates": [[[[-82.345745265484, 9.8327239064169], [-83.164076507092, 7.7402148611428], [-85.836760997772, 9.4173793620844], [-86.289413273335, 11.018860560027], [-85.411022007465, 11.154495319768], [-83.253780305386, 11.031850314318], [-82.345745265484, 9.8327239064169]]], [[[-90.357213914394, 13.571259814305], [-89.156501591206, 14.593867742357], [-88.118993639946, 15.922493702258], [-79.930405318737, 21.028753398843], [-77.613800168037, 19.434517765207], [-73.612276911736, 20.117839630492], [-81.027136445045, 23.90774637848], [-79.595024585724, 27.116179878336], [-50.640728473663, 47.361000390678], [-74.956884384155, 75.555035919386], [-58.406581878662, 82.637318822619], [-76.563377380371, 84.115459571006], [-170.49639701843, 71.975163797827], [-174.56365585327, 55.62964345413], [-125.10432243347, 32.51272930836], [-105.14683127403, 18.209275138895], [-90.357213914394, 13.571259814305]]]]}"
temporal 1930-01-01/2020-09-03
title BEAST log data from: Characterizing a century of genetic diversity and contemporary antigenic diversity of N1 neuraminidase in IAV from North American swine

data.gov

An official website of the GSA's Technology Transformation Services

Looking for U.S. government information and services?
Visit USA.gov