Angus Sequence Data: Animal 519-2
Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.The National Animal Germplasm Program does not have germplasm for this animal.There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the Collection Dataset. In the diagram, the two reads would correspond to read 1 and read 3.Resources in this dataset:tar file containing 14 files. The files are:RAPiD-Genomics_F112_CSU_136201_P001_WA06_i5-515_i7-102_S6_L003_R1_001.fastq.gzRAPiD-Genomics_F112_CSU_136201_P001_WA06_i5-515_i7-102_S6_L003_R2_001.fastq.gzRAPiD-Genomics-F113-CSU-136201-P001-WA06-i5-515-i7-102_S142_L002_R1_001.fastq.gzRAPiD-Genomics-F113-CSU-136201-P001-WA06-i5-515-i7-102_S142_L002_R2_001.fastq.gzRAPiD-Genomics-F113-CSU-136201-P001-WA06-i5-515-i7-102_S6_L001_R1_001.fastq.gzRAPiD-Genomics-F113-CSU-136201-P001-WA06-i5-515-i7-102_S6_L001_R2_001.fastq.gzRAPiD-Genomics-F114-CSU-136201-P001-WA06-i5-515-i7-102_S6_L003_R1_001.fastq.gzRAPiD-Genomics-F114-CSU-136201-P001-WA06-i5-515-i7-102_S6_L003_R2_001.fastq.gzRAPiD-Genomics_F115_CSU_136201_P001_WA06_i5-515_i7-102_S6_L001_R1_001.fastq.gzRAPiD-Genomics_F115_CSU_136201_P001_WA06_i5-515_i7-102_S6_L001_R2_001.fastq.gzRAPiD-Genomics_F115_CSU_136201_P001_WA06_i5-515_i7-102_S6_L002_R1_001.fastq.gzRAPiD-Genomics_F115_CSU_136201_P001_WA06_i5-515_i7-102_S6_L002_R2_001.fastq.gzRAPiD-Genomics_F116_CSU_136201_P001_WA06_i5-515_i7-102_S361_L002_R1_001.fastq.gzRAPiD-Genomics_F116_CSU_136201_P001_WA06_i5-515_i7-102_S361_L002_R2_001.fastq.gz
Resources
1 resource available
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https://app.globus.org/file-manager?origin_id=1e5031de-bb2d-4217-8f35-eda23529faa4&origin_path=%2Fnode33208%2F
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Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[
"005:18"
]
|
| contactPoint |
{
"fn": "Blackburn, Harvey",
"hasEmail": "mailto:harvey.blackburn@usda.gov"
}
|
| description | <p dir="ltr">Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.</p><p dir="ltr">The National Animal Germplasm Program does not have germplasm for this animal.</p><p dir="ltr">There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the <a href="https://data.nal.usda.gov/dataset/angus-sequence-dataset-collection">Collection Dataset</a>. In the diagram, the two reads would correspond to read 1 and read 3.</p><p dir="ltr">Resources in this dataset:</p><p dir="ltr">tar file containing 14 files. The files are:</p><ul><li>RAPiD-Genomics_F112_CSU_136201_P001_WA06_i5-515_i7-102_S6_L003_R1_001.fastq.gz</li><li>RAPiD-Genomics_F112_CSU_136201_P001_WA06_i5-515_i7-102_S6_L003_R2_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WA06-i5-515-i7-102_S142_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WA06-i5-515-i7-102_S142_L002_R2_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WA06-i5-515-i7-102_S6_L001_R1_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WA06-i5-515-i7-102_S6_L001_R2_001.fastq.gz</li><li>RAPiD-Genomics-F114-CSU-136201-P001-WA06-i5-515-i7-102_S6_L003_R1_001.fastq.gz</li><li>RAPiD-Genomics-F114-CSU-136201-P001-WA06-i5-515-i7-102_S6_L003_R2_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WA06_i5-515_i7-102_S6_L001_R1_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WA06_i5-515_i7-102_S6_L001_R2_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WA06_i5-515_i7-102_S6_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WA06_i5-515_i7-102_S6_L002_R2_001.fastq.gz</li><li>RAPiD-Genomics_F116_CSU_136201_P001_WA06_i5-515_i7-102_S361_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics_F116_CSU_136201_P001_WA06_i5-515_i7-102_S361_L002_R2_001.fastq.gz</li></ul><p dir="ltr"><br></p> |
| distribution |
[
{
"@type": "dcat:Distribution",
"title": "https://app.globus.org/file-manager?origin_id=1e5031de-bb2d-4217-8f35-eda23529faa4&origin_path=%2Fnode33208%2F",
"mediaType": "text/html",
"downloadURL": "https://app.globus.org/file-manager?origin_id=1e5031de-bb2d-4217-8f35-eda23529faa4&origin_path=%2Fnode33208%2F"
}
]
|
| identifier | 10.15482/USDA.ADC/1529245 |
| keyword |
[
"ARS",
"DNA sequence",
"GRIN",
"NP101",
"animals",
"cryopreservation",
"data.gov",
"genetic diversity",
"germplasm"
]
|
| license | https://www.usa.gov/publicdomain/label/1.0/ |
| modified | 2026-02-19 |
| programCode |
[
"005:040"
]
|
| publisher |
{
"name": "Agricultural Research Service",
"@type": "org:Organization"
}
|
| spatial |
"{"type": "Point", "coordinates": [-106.56610600168, 41.222307724193]}"
|
| temporal | 2012-01-01/2013-12-31 |
| title | Angus Sequence Data: Animal 519-2 |
