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Try the next-generation Data Catalog at catalog-beta.data.gov and help shape it with your feedback.

38 datasets found
  • Federal

    GEO (Gene Expression Omnibus)

    U.S. Department of Health & Human Services —

    GEO (Gene Expression Omnibus) is a public functional genomics data repository supporting MIAME-compliant data submissions. There are also tools provided to help users...
  • Federal

    Database of Short Genetic Variations (dbSNP)

    U.S. Department of Health & Human Services —

    Database of Short Genetic Variations (dbSNP) contains human single nucleotide variations, microsatellites, and small-scale insertions and deletions along with...
  • Federal

    Medical Text Indexer (MTI)

    U.S. Department of Health & Human Services —

    A system for producing indexing recommendations to assist in the indexing process at NLM. Currently provides indexing recommendations to more than 100 journals based...
  • Federal

    OSIRIS

    U.S. Department of Health & Human Services —

    A public domain quality assurance software package that facilitates the assessment of multiplex short tandem repeat (STR) DNA profiles based on laboratory-specific...
  • Federal

    Transcriptome Shotgun Assembly (TSA) Sequence Database and Submissions

    U.S. Department of Health & Human Services —

    TSA is an archive of computationally assembled transcript sequences from primary data such as ESTs and Next Generation Sequencing Technologies. The overlapping...
  • Federal

    Database of Genotype and Phenotype (dbGaP)

    U.S. Department of Health & Human Services —

    Database of Genotype and Phenotype (dbGaP) was developed to archive and distribute the data and results from studies that have investigated the interaction of...
  • Federal

    RxNav

    U.S. Department of Health & Human Services —

    An application for navigating RxNorm drugs. This applications displays relations among drug entities in RxNorm and provides additional information about RxNorm drugs,...
  • Federal

    CD Search (Conserved Domain Search Service)

    U.S. Department of Health & Human Services —

    Identifies the conserved domains present in a protein sequence. CD-Search uses RPS-BLAST (Reverse Position-Specific BLAST) to compare a query sequence against...
  • Federal

    Open Reading Frame Finder (ORF Finder)

    U.S. Department of Health & Human Services —

    A graphical analysis tool that finds all open reading frames in a user's sequence or in a sequence already in the database.
  • Federal

    Structure - Molecular Modeling Database (MMDB)

    U.S. Department of Health & Human Services —

    Three dimensional structures provide a wealth of information on the biological function and the evolutionary history of macromolecules. They can be used to examine...
  • Federal

    PSSM Viewer

    U.S. Department of Health & Human Services —

    Users can display, sort, subset and download position-specific score matrices (PSSMs) either from CDD records or from Position Specific Iterated (PSI)-BLAST protein...
  • Federal

    BLAST (Basic Local Alignment Search Tool)

    U.S. Department of Health & Human Services —

    BLAST (Basic Local Alignment Search Tool) finds regions of similarity between biological sequences. BLAST includes several specialized search interfaces: SmartBLAST,...
  • Federal

    Sequence Set Browser

    U.S. Department of Health & Human Services —

    This site is for browsing WGS (Whole Genome Shotgun) genomes, TSA (Transcriptome Shotgun Assemblies) and TLS (Targeted Locus Study) sets. WGS sequences are incomplete...
  • Federal

    Vector Alignment Search Tool (VAST)

    U.S. Department of Health & Human Services —

    A computer algorithm that identifies similar protein 3-dimensional structures. Structure neighbors for every structure in MMDB are pre-computed and accessible via...
  • Federal

    CDTree

    U.S. Department of Health & Human Services —

    CDTree is a stand-alone application for classifying protein sequences and investigating their evolutionary relationships. CDTree can import, analyze and update...
  • Federal

    E-utilities (Entrez Programming Utilities)

    U.S. Department of Health & Human Services —

    E-utilities (Entrez Programming Utilities) are a set of eight server-side programs that provide a stable interface into the Entrez query and database system at the...
  • Federal

    Constraint-Based Multiple Alignment Tool (COBALT)

    U.S. Department of Health & Human Services —

    Constraint-Based Multiple Alignment Tool (COBALT) is a protein multiple sequence alignment tool that finds a collection of pairwise constraints derived from conserved...
  • Federal

    SPDI Variation Service

    U.S. Department of Health & Human Services —

    This genetic variation services interconvert and transform short genetic variants between HGVS expressions, VCF format, and the new SPDI (Sequence Position Deletion...
  • Federal

    Library LinkOut

    U.S. Department of Health & Human Services —

    LinkOut is a service that allows you to link directly from PubMed and other NCBI databases to a wide range of information and services beyond the NCBI systems....
  • Federal

    Cn3D

    U.S. Department of Health & Human Services —

    A stand-alone application for viewing 3-dimensional structures from NCBI Entrez retrieval service. Runs on Windows, Macintosh, and UNIX and can be configured to...
38 datasets found

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