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Try the next-generation Data Catalog at catalog-beta.data.gov and help shape it with your feedback.

21 datasets found
  • Federal

    Adverse Outcome Pathway Database (AOP-DB) version 2

    U.S. Environmental Protection Agency —

    The EPA has developed the Adverse Outcome Pathway Database (AOP-DB) to better characterize adverse outcomes of toxicological interest that are relevant to human...
  • Federal

    CD Search (Conserved Domain Search Service)

    U.S. Department of Health & Human Services —

    Identifies the conserved domains present in a protein sequence. CD-Search uses RPS-BLAST (Reverse Position-Specific BLAST) to compare a query sequence against...
  • Federal

    BioSample

    U.S. Department of Health & Human Services —

    The BioSample database contains descriptions of biological source materials used in experimental assays.
  • Federal

    BioProject

    U.S. Department of Health & Human Services —

    The BioProject database links to data that have been or will be deposited into archival databases maintained at members of the International Nucleotide Sequence...
  • Federal

    Conserved Domain Database (CDD)

    U.S. Department of Health & Human Services —

    Conserved Domain Database (CDD) is a protein annotation resource that consists of a collection of well-annotated multiple sequence alignment models for ancient...
  • Federal

    PSSM Viewer

    U.S. Department of Health & Human Services —

    Users can display, sort, subset and download position-specific score matrices (PSSMs) either from CDD records or from Position Specific Iterated (PSI)-BLAST protein...
  • Federal

    BLAST (Basic Local Alignment Search Tool)

    U.S. Department of Health & Human Services —

    BLAST (Basic Local Alignment Search Tool) finds regions of similarity between biological sequences. BLAST includes several specialized search interfaces: SmartBLAST,...
  • Federal

    UniVec

    U.S. Department of Health & Human Services —

    UniVec and UniVec_Core databases in FASTA format.
  • Federal

    E-utilities (Entrez Programming Utilities)

    U.S. Department of Health & Human Services —

    E-utilities (Entrez Programming Utilities) are a set of eight server-side programs that provide a stable interface into the Entrez query and database system at the...
  • Federal

    Structure - Molecular Modeling Database (MMDB)

    U.S. Department of Health & Human Services —

    Three dimensional structures provide a wealth of information on the biological function and the evolutionary history of macromolecules. They can be used to examine...
  • Federal

    Third Party Annotation (TPA) Database

    U.S. Department of Health & Human Services —

    A database that contains sequences built from the existing primary sequence data in GenBank. The sequences and corresponding annotations are experimentally supported...
  • Federal

    IgBLAST

    U.S. Department of Health & Human Services —

    IgBLAST was developed at NCBI to facilitate analysis of immunoglobulin as well as T cell receptor (TR) sequences. It uses BLAST search algorithm.
  • Federal

    RefSeq: NCBI Reference Sequence Database

    U.S. Department of Health & Human Services —

    A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
  • Federal

    Whole Genome Shotgun Submissions

    U.S. Department of Health & Human Services —

    Whole Genome Shotgun (WGS) projects are genome assemblies of incomplete genomes or incomplete chromosomes of prokaryotes or eukaryotes that are generally being...
  • Federal

    Computational Model of Secondary Palate Fusion and Disruption ChemResTox Data

    U.S. Environmental Protection Agency —

    Morphogenetic events are driven by cell-generated physical forces and complex cellular dynamics. To improve our capacity to predict developmental effects from...
  • Federal

    GrainGenes- A Global Data Repository for Small Grains

    Department of Agriculture —

    GrainGenes is an international, centralized crop database for peer-reviewed small grains data and information portal that serves the small grains research and...
  • Federal

    NCBI Learn

    U.S. Department of Health & Human Services —

    NCBI creates a variety of educational products including courses, workshops, webinars, training materials and documentation. NCBI educational events are free and open...
  • Federal

    A basis for a visual language for describing, archiving and analyzing functional models of complex biological systems

    U.S. Department of Health & Human Services —

    Background: We propose that a computerized, internet-based graphical description language for systems biology will be essential for describing, archiving and...
  • Federal

    GRAF (Genetic Relationship and Fingerprinting)

    U.S. Department of Health & Human Services —

    GRAF (Genetic Relationship and Fingerprinting) is a C++ program that quickly finds the closely related subjects, infers subject ancestry, determines subject sexes...
  • Federal

    UniGene archived data (RETIRED)

    U.S. Department of Health & Human Services —

    An automated analytical system for producing organized views of the transcriptome from a growing number of organisms. UniGene was retired in July 2019; however, you...
21 datasets found

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